Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq9873 96.9 3e-15 >seq9873 Length=3435365 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 || ||| ||||| | | ||||| || || ||||| || || |||||| ||||| || Sbjct 2562352 TTACTTTTCTTTTGGATCAGAAATATACGTTTCAATGAGCAAAGAATACATCTCAGAATG 2562293 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 |||||||| || || || ||||| |||||||| || | ||||| | || ||| || Sbjct 2562292 GATGTTTTCTATTGCAATTTGAAAGCCATAAAAACAACGTGCTTCGGTAATTTTTACCTC 2562233 Query 14240 C-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14298 || | || ||| || || ||| |||||||| |||||||| || ||||| |||| Sbjct 2562232 TTGACTGAA-TCTCTCAATCAGATTCTCATTAACAATACCATCGGATGCGGCAAAGAATG 2562174 Query 14299 CCAATATGTTTTTAATAAAGTATTGCTCTTCA 14330 | || | | ||||||||||| ||| ||| Sbjct 2562173 CTAAGACATGAGAAATAAAGTATTTCTCGTCA 2562142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 172/253 (68%), Gaps = 7/253 (3%) Strand=Plus/Minus Query 13646 AAAATCAAATGGA--TTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 |||||||||| || ||||| ||| |||| ||| | |||| | | | | ||| Sbjct 2563461 AAAATCAAATCGAACTTTAT----ATATTACCTTT-TCAAATCCTAATGCAACGAACAAT 2563407 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 || || || | ||| || || || | | |||| | |||||||||||||||| || Sbjct 2563406 CTGTCCGCGACAAATTCGATGTAATTACACATAAGTGTGCAATTCATACCTATTAATTCG 2563347 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 ||||| | | | ||||||||||||||||| || ||| || || ||||||| | Sbjct 2563346 ACAGGTAATGCCTGTGTTAAAAATTCTTTTTCAATTTCCACGGCATCCATTATAATCGAT 2563287 Query 13824 GTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCA 13883 | | | |||| || || | | | | ||||||||| |||||||| || |||||| Sbjct 2563286 TTCACATGCTCAAATGATGGCTTTTGTATGATATGTTTAAACATTAAACAGGCGAAATCA 2563227 Query 13884 CAATGAAGGCCCT 13896 ||||| | |||| Sbjct 2563226 CAATGTAATCCCT 2563214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479635778288600