Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq9873 109 5e-19
>seq9873
Length=3435365
Score = 109 bits (120), Expect = 5e-19
Identities = 153/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 13908 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967
|| ||| ||||| | | ||||| || || ||||| || || |||||| ||||| ||
Sbjct 2562352 TTACTTTTCTTTTGGATCAGAAATATACGTTTCAATGAGCAAAGAATACATCTCAGAATG 2562293
Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027
||||||||||| || || ||||| ||||||||||| | ||||| | || ||||||
Sbjct 2562292 GATGTTTTCTATTGCAATTTGAAAGCCATAAAAACAACGTGCTTCGGTAATTTTTACCTC 2562233
Query 14028 C-GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATG 14086
|| | || ||| || || || ||||||||||||||||| || ||||| ||||
Sbjct 2562232 TTGACTGAA-TCTCTCAATCAGATTCTCATTAACAATACCATCGGATGCGGCAAAGAATG 2562174
Query 14087 CCAATATGTTTTTAATAAAGTATTGCTCTTCA 14118
| || | | ||||||||||| ||| |||
Sbjct 2562173 CTAAGACATGAGAAATAAAGTATTTCTCGTCA 2562142
Score = 82.4 bits (90), Expect = 7e-11
Identities = 152/223 (68%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 13462 ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGAC 13521
|| || ||| | |||| | | | || ||||| || || | ||| || || || | | ||
Sbjct 2563436 ACCTTTTCAAATCCTAATGCAACGAACAATCTGTCCGCGACAAATTCGATGTAATTACAC 2563377
Query 13522 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTT 13581
|| | |||||||||||||||| || ||||| | | | |||||||||||||||
Sbjct 2563376 ATAAGTGTGCAATTCATACCTATTAATTCGACAGGTAATGCCTGTGTTAAAAATTCTTTT 2563317
Query 13582 TCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT 13641
|| || ||| || || ||||||| || | | ||| || || | | |
Sbjct 2563316 TCAATTTCCACGGCATCCATTATAATCGATTTCACATGCTCAAATGATGGCTTTTGTATG 2563257
Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13684
| ||||||||| |||||||| || ||||||||||| | ||||
Sbjct 2563256 ATATGTTTAAACATTAAACAGGCGAAATCACAATGTAATCCCT 2563214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478496797285560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |