Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq9873 109 5e-19 >seq9873 Length=3435365 Score = 109 bits (120), Expect = 5e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 13908 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 || ||| ||||| | | ||||| || || ||||| || || |||||| ||||| || Sbjct 2562352 TTACTTTTCTTTTGGATCAGAAATATACGTTTCAATGAGCAAAGAATACATCTCAGAATG 2562293 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 ||||||||||| || || ||||| ||||||||||| | ||||| | || |||||| Sbjct 2562292 GATGTTTTCTATTGCAATTTGAAAGCCATAAAAACAACGTGCTTCGGTAATTTTTACCTC 2562233 Query 14028 C-GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATG 14086 || | || ||| || || || ||||||||||||||||| || ||||| |||| Sbjct 2562232 TTGACTGAA-TCTCTCAATCAGATTCTCATTAACAATACCATCGGATGCGGCAAAGAATG 2562174 Query 14087 CCAATATGTTTTTAATAAAGTATTGCTCTTCA 14118 | || | | ||||||||||| ||| ||| Sbjct 2562173 CTAAGACATGAGAAATAAAGTATTTCTCGTCA 2562142 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 13462 ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGAC 13521 || || ||| | |||| | | | || ||||| || || | ||| || || || | | || Sbjct 2563436 ACCTTTTCAAATCCTAATGCAACGAACAATCTGTCCGCGACAAATTCGATGTAATTACAC 2563377 Query 13522 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTT 13581 || | |||||||||||||||| || ||||| | | | ||||||||||||||| Sbjct 2563376 ATAAGTGTGCAATTCATACCTATTAATTCGACAGGTAATGCCTGTGTTAAAAATTCTTTT 2563317 Query 13582 TCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT 13641 || || ||| || || ||||||| || | | ||| || || | | | Sbjct 2563316 TCAATTTCCACGGCATCCATTATAATCGATTTCACATGCTCAAATGATGGCTTTTGTATG 2563257 Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13684 | ||||||||| |||||||| || ||||||||||| | |||| Sbjct 2563256 ATATGTTTAAACATTAAACAGGCGAAATCACAATGTAATCCCT 2563214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478496797285560