Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq10177 100 2e-16 seq9764 100 2e-16 seq15293 98.7 8e-16 >seq10177 Length=3058365 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 42922 TTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATC 42981 ||||| | |||||||||||||| |||||| | || |||| |||||||| || || || Sbjct 2346115 TTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGATG 2346174 Query 42982 AATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCA 43041 | |||||||||||| | || | ||||| || || |||| | ||||| | | Sbjct 2346175 AGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 2346234 Query 43042 ACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAA 43101 | || ||| |||||| || || | || || ||||| || || || |||||||| ||| Sbjct 2346235 ATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAAA 2346294 Query 43102 ATTTGCAT 43109 || ||||| Sbjct 2346295 ATCTGCAT 2346302 >seq9764 Length=1320143 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| |||| ||| || || |||| ||| || ||||| | |||||||| || Sbjct 201241 CCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 201182 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| |||| ||| ||||| || || || || || |||||||| | || Sbjct 201181 AGAGTTCTGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGG 201122 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || |||| | | || || | ||| ||||| ||| ||||| Sbjct 201121 ATTCCCTCTTTGTC-CTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGAC 201063 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || ||||||||||| |||||||||||| Sbjct 201062 TTCGAGGGTGATGGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCATT 201014 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | |||| ||| | ||| || ||||| | ||||||||||| Sbjct 199873 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 199814 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | |||| ||||| || || || || || ||||| || |||||||| | || Sbjct 199813 AGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 199754 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| ||||||| | | | || || ||| || || Sbjct 199753 ATGCCTTCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACC 199694 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||| || || |||||||||||||| |||||||| Sbjct 199693 TCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | |||| ||| | ||| || ||||| | ||||||||||| Sbjct 200557 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200498 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | |||| |||| || ||||| || || ||||| || |||||||| | || Sbjct 200497 AGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 200438 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | || || | | | ||| || || || || Sbjct 200437 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACT 200378 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || |||||||||||||| ||||||||| Sbjct 200377 TCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCATT 200330 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | ||| ||||| || | ||| || || || | |||||| || || Sbjct 201013 CCTCCTCGAAGACGTAAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAG 200954 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | |||| ||||| || ||||| || || ||||| || |||||||| | || Sbjct 200953 AGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 200894 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | || || | | | |||||| || || || Sbjct 200893 ATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 200834 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || ||||||||||| || || |||||| Sbjct 200833 TCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCATT 200786 >seq15293 Length=768699 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || ||||| || |||||||| | || ||||| || | || ||||| || Sbjct 125930 CCACCGCGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAA 125989 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | ||||| |||||||| ||||||| ||| ||||| | || Sbjct 125990 AGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGG 126049 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || |||| | |||| || | ||| ||||| || ||||| Sbjct 126050 ATTCCTTCTTTGTC-CTGAATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCGAC 126108 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||| || ||||| |||||||||||||| Sbjct 126109 TTCCAGAGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | || ||||| || | ||||| || || | ||| || |||| || Sbjct 126176 ACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126235 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||| ||||| ||||| |||| ||| ||||| | || | |||||||| || Sbjct 126236 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGA 126295 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | ||| |||||| ||||| || || | || || ||||| Sbjct 126296 ATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTG 126355 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || ||||| |||||||||||||| Sbjct 126356 CCGGTGAGCGTTTTGACAAAAATTTGCAT 126384 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | || ||||| || | ||||| || || | ||| || |||| || Sbjct 126404 ACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126463 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||| ||||| ||||| |||| ||| ||||| | || | |||||||| || Sbjct 126464 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGA 126523 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | ||| |||||| ||||| || || | || || ||||| Sbjct 126524 ATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTG 126583 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || ||||| |||||||||||||| Sbjct 126584 CCGGTGAGCGTTTTGACAAAAATTTGCAT 126612 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | || ||||| || | ||||| || || | ||| || |||| || Sbjct 126632 ACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126691 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||| ||||| ||||| |||| ||| ||||| | || | |||||||| || Sbjct 126692 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGA 126751 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | ||| |||||| ||||| || || | || || ||||| Sbjct 126752 ATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTG 126811 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || ||||| |||||||||||||| Sbjct 126812 CCGGTGAGCGTTTTGACAAAAATTTGCAT 126840 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | || || ||||| | || ||||| || Sbjct 127070 CCACCACGTAGACGAAGAACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAG 127129 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| || | ||| || ||||| || ||||| ||||| ||||| | || Sbjct 127130 AGAGTACGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGG 127189 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| | ||||||| | | | || || ||||| || Sbjct 127190 ATGCCTTCCTTGTC-CTGAATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAAC 127248 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||| ||||||||||| || || ||||| ||||| ||||||||| Sbjct 127249 TTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCATT 127297 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | || ||||| || | ||||| || || | ||| || |||| || Sbjct 126860 ACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126919 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||| ||||| ||||| |||| ||| ||||| | || | ||||| || || Sbjct 126920 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGA 126979 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || ||||||| | | | || || ||||| || || | ||| ||||||||| Sbjct 126980 ATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTT 127039 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || || ||||| ||||| ||||||||| Sbjct 127040 CCCGTCAGGGTTTTGACAAAGATTTGCATT 127069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381298119299982