Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10371 120 4e-22 seq9873 107 3e-18 seq9983 91.5 2e-13 >seq10371 Length=124667 Score = 120 bits (132), Expect = 4e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 71050 TGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTC 71109 |||| ||||||| || ||| | ||| || | || ||||| | |||||| ||||| Sbjct 62499 TGAACGGATCCAAAATTTGCGAGTATCTCGTTCTGCATATCTTCGTCCCATAAATTTCTA 62558 Query 71110 TCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTA 71169 |||||||| ||| || ||||| ||||| || | |||||||||||||||||| | Sbjct 62559 GCGGTTAAATCTCGCAGTAGATGTGGATTGACAATGACAAATTCTCCAGACAATACGCGC 62618 Query 71170 CGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCA 71229 | || ||||| || ||||| ||||| | || || ||||| || ||||| || || Sbjct 62619 CTCACATAGATATTGCTTGTATATGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCC 62678 Query 71230 GTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGT 71280 || || || || ||||||||||| | || || |||||| | ||| ||| Sbjct 62679 GTCGAGGCCGTTGGCATAGGTGCTATTAAAAGGGAATTTCTTATACCGTGT 62729 Score = 105 bits (116), Expect = 9e-18 Identities = 183/266 (69%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 || ||||| || || | |||| | |||||||||| || || ||||| || ||||| Sbjct 64616 CTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAA 64675 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || ||| |||| ||| || || || || || || || || | ||| || Sbjct 64676 TATCGTTCGGACAAATAATTATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAATA 64735 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 || || || || | ||| |||||||||||||| ||||| || ||||| || |||||| Sbjct 64736 CCAACAGCTACTCTCATCAACATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTTC 64795 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 72636 | |||||| | | || | ||||||||||||| ||| || || |||||||| ||| Sbjct 64796 AGCAAGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGTCTCGATCG 64855 Query 72637 TAAATAATAACCGAATTGAGTTTATC 72662 || || || | || | ||||| || Sbjct 64856 TATATTATGGCAGAGTCCAGTTTCTC 64881 Score = 98.7 bits (108), Expect = 1e-15 Identities = 223/327 (68%), Gaps = 10/327 (3%) Strand=Plus/Plus Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||| |||||||||||||| |||||| ||| | |||| ||||||||| | |||| Sbjct 63138 TACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTCGATAGGATAAAAGTTAA 63197 Query 71603 TATCTATAATTTTATTGAGATTTCTGACT-ATTACTTTGACCACATCCTTTAGTTTGAGA 71661 || || | ||||| ||||| | || | | | ||| | || || ||||| | Sbjct 63198 CGTCGATGACTTTATCTAGATTAC-GAGTAACGATTTTCGCGACTGTTTTAAGTTTATCA 63256 Query 71662 AAATCAAA---TCTCCCATC--TATT-ACAAACACGTTCAAGGCAACAGATGCCAGATTA 71715 ||||| || | || || |||| ||||||| ||| | || | |||||| | |||| Sbjct 63257 AAATCGAAAGTTTTCGTGTCTGTATTAACAAACATGTTGACAGCGATAGATGCTAAATTA 63316 Query 71716 CAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACAC 71775 || || || || || || | ||| |||| | |||||| ||||| | || || || Sbjct 63317 CACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCACAAGTTGCTGCAT 63376 Query 71776 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGAAT 71834 ||||| || |||| || || ||||| | |||| | || || ||| |||||||| || Sbjct 63377 TTGATAGTGCCTATATGCTGATGATT-CGATTTTCGATTGCAATGATCTTTATAAAGCAT 63435 Query 71835 AAACGGAGTACCAGTTTCAATCTGAGA 71861 | | || || || ||||| | ||||| Sbjct 63436 ATAAGGTGTTCCGGTTTCTACTTGAGA 63462 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436 |||| ||| || ||||| | |||| || | || | ||||||||| || ||||| || Sbjct 62898 CCTG-ATACGTTTCGTAAGTGCCTTTTTCCGCAGCCAATTCACAACTGGCTTCTAAGGCA 62956 Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496 |||||||||| ||||||||||| || | || || |||| || || ||| || || Sbjct 62957 CCATAATAAAGCGTTTCGAAAATTTTAATGTTAAGTTCTTTCGCCTCTTTGCTCTCGAAG 63016 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546 ||||| | || | ||||| |||||||| ||||| | |||||||| Sbjct 63017 GGATATCGCATTAGTAGGAACGCATCTGCTAAACCTTGTATTCCAATACC 63066 >seq9873 Length=3435365 Score = 107 bits (118), Expect = 3e-18 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 42559 ATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATC 42618 || |||||||||||| |||||||| || ||| | |||||||||||||| |||||||| || Sbjct 2561933 ATTTACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTTCCAGATGTC 2561874 Query 42619 ATGATATTGAATTGGGAAAATAACAAATCTATTTGGA 42655 | |||||||||| || || || ||||| | ||||||| Sbjct 2561873 AGGATATTGAATAGGAAACATTACAAAACGATTTGGA 2561837 >seq9983 Length=1335725 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | || ||||| |||||||||||||| |||| || ||||| || |||| | Sbjct 1104062 CACTGAACACCTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGA 1104121 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | || |||||||||||||| | | ||| || || |||| ||||||| | |||| Sbjct 1104122 TTGCGTAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1104181 Query 72881 ATTCTACCGTTGTTACTCCA 72900 |||| | ||||| |||||| Sbjct 1104182 ATTCAATTGTTGTCACTCCA 1104201 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 ||||| ||||| || |||| || | |||| |||||||| || |||| || |||| Sbjct 1102291 CATATAACTCGTAAGGACCTTTTTCATTAGCTATCTCACAACTAGCTTCTAGAGCGCCAT 1102350 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 |||| | || || ||||| | ||||| || | ||||| ||| |||||||||| Sbjct 1102351 AATAGAGAGTCTCAAAAATTTGAACGTTGAGTTCATTAGCTTCTTTGCTTTCAAATGGAT 1102410 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546 | | | | ||| || || ||||||||||| || || |||||||| Sbjct 1102411 ATCTCATTAAAATGAATGCATCTGCTAATCCCTGTACACCAATACC 1102456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671010181878040