Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq10371 120 4e-22
seq9873 107 3e-18
seq9983 91.5 2e-13
>seq10371
Length=124667
Score = 120 bits (132), Expect = 4e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 71050 TGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTC 71109
|||| ||||||| || ||| | ||| || | || ||||| | |||||| |||||
Sbjct 62499 TGAACGGATCCAAAATTTGCGAGTATCTCGTTCTGCATATCTTCGTCCCATAAATTTCTA 62558
Query 71110 TCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTA 71169
|||||||| ||| || ||||| ||||| || | |||||||||||||||||| |
Sbjct 62559 GCGGTTAAATCTCGCAGTAGATGTGGATTGACAATGACAAATTCTCCAGACAATACGCGC 62618
Query 71170 CGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCA 71229
| || ||||| || ||||| ||||| | || || ||||| || ||||| || ||
Sbjct 62619 CTCACATAGATATTGCTTGTATATGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCC 62678
Query 71230 GTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGT 71280
|| || || || ||||||||||| | || || |||||| | ||| |||
Sbjct 62679 GTCGAGGCCGTTGGCATAGGTGCTATTAAAAGGGAATTTCTTATACCGTGT 62729
Score = 105 bits (116), Expect = 9e-18
Identities = 183/266 (69%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456
|| ||||| || || | |||| | |||||||||| || || ||||| || |||||
Sbjct 64616 CTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAA 64675
Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516
|| ||| |||| ||| || || || || || || || || | ||| ||
Sbjct 64676 TATCGTTCGGACAAATAATTATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAATA 64735
Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576
|| || || || | ||| |||||||||||||| ||||| || ||||| || ||||||
Sbjct 64736 CCAACAGCTACTCTCATCAACATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTTC 64795
Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 72636
| |||||| | | || | ||||||||||||| ||| || || |||||||| |||
Sbjct 64796 AGCAAGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGTCTCGATCG 64855
Query 72637 TAAATAATAACCGAATTGAGTTTATC 72662
|| || || | || | ||||| ||
Sbjct 64856 TATATTATGGCAGAGTCCAGTTTCTC 64881
Score = 98.7 bits (108), Expect = 1e-15
Identities = 223/327 (68%), Gaps = 10/327 (3%)
Strand=Plus/Plus
Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602
|||| |||||||||||||| |||||| ||| | |||| ||||||||| | ||||
Sbjct 63138 TACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTCGATAGGATAAAAGTTAA 63197
Query 71603 TATCTATAATTTTATTGAGATTTCTGACT-ATTACTTTGACCACATCCTTTAGTTTGAGA 71661
|| || | ||||| ||||| | || | | | ||| | || || ||||| |
Sbjct 63198 CGTCGATGACTTTATCTAGATTAC-GAGTAACGATTTTCGCGACTGTTTTAAGTTTATCA 63256
Query 71662 AAATCAAA---TCTCCCATC--TATT-ACAAACACGTTCAAGGCAACAGATGCCAGATTA 71715
||||| || | || || |||| ||||||| ||| | || | |||||| | ||||
Sbjct 63257 AAATCGAAAGTTTTCGTGTCTGTATTAACAAACATGTTGACAGCGATAGATGCTAAATTA 63316
Query 71716 CAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACAC 71775
|| || || || || || | ||| |||| | |||||| ||||| | || || ||
Sbjct 63317 CACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCACAAGTTGCTGCAT 63376
Query 71776 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGAAT 71834
||||| || |||| || || ||||| | |||| | || || ||| |||||||| ||
Sbjct 63377 TTGATAGTGCCTATATGCTGATGATT-CGATTTTCGATTGCAATGATCTTTATAAAGCAT 63435
Query 71835 AAACGGAGTACCAGTTTCAATCTGAGA 71861
| | || || || ||||| | |||||
Sbjct 63436 ATAAGGTGTTCCGGTTTCTACTTGAGA 63462
Score = 87.8 bits (96), Expect = 2e-12
Identities = 122/170 (72%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436
|||| ||| || ||||| | |||| || | || | ||||||||| || ||||| ||
Sbjct 62898 CCTG-ATACGTTTCGTAAGTGCCTTTTTCCGCAGCCAATTCACAACTGGCTTCTAAGGCA 62956
Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496
|||||||||| ||||||||||| || | || || |||| || || ||| || ||
Sbjct 62957 CCATAATAAAGCGTTTCGAAAATTTTAATGTTAAGTTCTTTCGCCTCTTTGCTCTCGAAG 63016
Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546
||||| | || | ||||| |||||||| ||||| | ||||||||
Sbjct 63017 GGATATCGCATTAGTAGGAACGCATCTGCTAAACCTTGTATTCCAATACC 63066
>seq9873
Length=3435365
Score = 107 bits (118), Expect = 3e-18
Identities = 82/97 (85%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 42559 ATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATC 42618
|| |||||||||||| |||||||| || ||| | |||||||||||||| |||||||| ||
Sbjct 2561933 ATTTACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTTCCAGATGTC 2561874
Query 42619 ATGATATTGAATTGGGAAAATAACAAATCTATTTGGA 42655
| |||||||||| || || || ||||| | |||||||
Sbjct 2561873 AGGATATTGAATAGGAAACATTACAAAACGATTTGGA 2561837
>seq9983
Length=1335725
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820
|||| || | || ||||| |||||||||||||| |||| || ||||| || |||| |
Sbjct 1104062 CACTGAACACCTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGA 1104121
Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880
| || |||||||||||||| | | ||| || || |||| ||||||| | ||||
Sbjct 1104122 TTGCGTAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1104181
Query 72881 ATTCTACCGTTGTTACTCCA 72900
|||| | ||||| ||||||
Sbjct 1104182 ATTCAATTGTTGTCACTCCA 1104201
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440
||||| ||||| || |||| || | |||| |||||||| || |||| || ||||
Sbjct 1102291 CATATAACTCGTAAGGACCTTTTTCATTAGCTATCTCACAACTAGCTTCTAGAGCGCCAT 1102350
Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500
|||| | || || ||||| | ||||| || | ||||| ||| ||||||||||
Sbjct 1102351 AATAGAGAGTCTCAAAAATTTGAACGTTGAGTTCATTAGCTTCTTTGCTTTCAAATGGAT 1102410
Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546
| | | | ||| || || ||||||||||| || || ||||||||
Sbjct 1102411 ATCTCATTAAAATGAATGCATCTGCTAATCCCTGTACACCAATACC 1102456
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671010181878040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |