Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq9764 168 5e-37 seq10177 109 4e-19 seq15293 95.1 9e-15 >seq9764 Length=1320143 Score = 168 bits (186), Expect = 5e-37 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 || ||||||||| || || ||||| |||||||| ||||||||||| ||| |||| | Sbjct 201230 TCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCC 201171 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 |||||| | ||| ||||||||| | || ||||||||||| || || ||||| ||||| Sbjct 201170 GTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGATTCCCTCTTT 201111 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| ||||||| |||||| |||| ||||| || | ||| || || | ||| || Sbjct 201110 GTCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGGGTGAT 201051 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| || |||||||| || ||||||||||| Sbjct 201050 GGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCAT 201015 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| ||||| |||||||| |||||||||||| || |||| ||||||| Sbjct 199856 AACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTC 199797 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || || || |||||| | |||||||||||||| || ||||| |||||||| || Sbjct 199796 CAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTG 199737 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| || ||| | ||||| ||||| | ||| || |||||||| |||||||| Sbjct 199736 GATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCTAAGGTGATGGTTTT 199677 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| ||||| |||||||| Sbjct 199676 CCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| ||||| |||||||| |||||||||||| || |||| ||||||| Sbjct 200540 AACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTC 200481 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || ||||||||| | |||||||||||||| || ||||| ||||||||||| Sbjct 200480 CAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTG 200421 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| ||||||| ||||| ||| || || | ||| |||||||| Sbjct 200420 GATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACTTCGAGGGTGATGGTTTT 200361 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| ||||| |||||||| Sbjct 200360 CCCAGTGAGAGTTTTCACAAAGATTTGCAT 200331 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| ||||| |||||||| |||||||||||| || |||| ||||||| Sbjct 200084 AACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTC 200025 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || ||||||||| | |||||||||||||| || ||||| |||||||| || Sbjct 200024 CAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTG 199965 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| || || ||||||| ||||| ||| || || | ||| |||||||| Sbjct 199964 GATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGTTTT 199905 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||||||||| || || ||||| Sbjct 199904 CCCAGTGAGAGTTTTTACGAAGATCTGCAT 199875 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| ||||| |||||||| |||||||||||| || |||| ||||||| Sbjct 200768 AACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTC 200709 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || ||||||||| | |||||||||||||| || ||||| |||||||| || Sbjct 200708 CAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTG 200649 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| || || ||||||| ||||| ||| || || | ||| |||||||| Sbjct 200648 GATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGTTTT 200589 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||||||||| || || ||||| Sbjct 200588 CCCAGTGAGAGTTTTTACGAAGATCTGCAT 200559 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 |||||| || ||||| || || ||||| || || ||||| || || | || |||| Sbjct 200999 TAAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGTCCTACCGTC 200940 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| || || ||||||||| | |||||||||||||| || ||||| ||||||||||| Sbjct 200939 TTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTC 200880 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || ||| |||||| ||||||| || || ||| || || | ||| ||||| Sbjct 200879 TTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGT 200820 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || |||||||| || || || ||||| Sbjct 200819 TTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200787 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| || || ||||| || || ||||| || || | || ||||||| Sbjct 200312 AACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGTCCTACCGTCTTC 200253 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || || ||||||||| | |||||||||||||| || ||||| ||||||||||| Sbjct 200252 CAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTG 200193 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||||| ||||||| || || ||| || || | ||| |||||||| Sbjct 200192 GATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTTTT 200133 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| || || || ||||| Sbjct 200132 CCCAGTGAGAGTTTTCACGAAGATCTGCAT 200103 >seq10177 Length=3058365 Score = 109 bits (120), Expect = 4e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 ||||||| || ||||||||| ||| | | | || || | |||||||||||| | | Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 2346172 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTT 15293 | | || ||||| || |||||||||||| ||||| || ||| ||| ||| | | Sbjct 2346173 TGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 2346232 Query 15294 CTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15353 | ||||||||| | ||||| || | ||| ||||||||||| || || ||||| || | Sbjct 2346233 CGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 2346292 Query 15354 AAATTTGCAT 15363 |||| ||||| Sbjct 2346293 AAATCTGCAT 2346302 >seq15293 Length=768699 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| ||||| ||||| ||||| || || || || ||||| ||||| Sbjct 125930 CCACCGCGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAA 125989 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | ||||| || || | ||||| | || || || || Sbjct 125990 AGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGG 126049 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTA 15314 |||||||||||||| |||||| ||| || || |||| || || || | || ||| | Sbjct 126050 ATTCCTTCTTTGTCCTGAATTTTAGCT-TTCACGTTTTCAATCGTGTC-CGATGCTTCGA 126107 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | || || ||||| || || || ||||| ||||||||||||||| Sbjct 126108 CTTCCAGAGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCATA 126157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362111316186639