Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq9764 168 5e-37
seq10177 109 4e-19
seq15293 95.1 9e-15
>seq9764
Length=1320143
Score = 168 bits (186), Expect = 5e-37
Identities = 167/216 (77%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207
|| ||||||||| || || ||||| |||||||| ||||||||||| ||| |||| |
Sbjct 201230 TCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCC 201171
Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267
|||||| | ||| ||||||||| | || ||||||||||| || || ||||| |||||
Sbjct 201170 GTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGATTCCCTCTTT 201111
Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327
||| ||||||| |||||| |||| ||||| || | ||| || || | ||| ||
Sbjct 201110 GTCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGGGTGAT 201051
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||||||| || |||||||| || |||||||||||
Sbjct 201050 GGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCAT 201015
Score = 154 bits (170), Expect = 1e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| | |||||| ||||| |||||||| |||||||||||| || |||| |||||||
Sbjct 199856 AACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTC 199797
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
|| || || |||||| | |||||||||||||| || ||||| |||||||| ||
Sbjct 199796 CAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTG 199737
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|| ||| || ||| | ||||| ||||| | ||| || |||||||| ||||||||
Sbjct 199736 GATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCTAAGGTGATGGTTTT 199677
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || |||||||| ||||| ||||||||
Sbjct 199676 CCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647
Score = 154 bits (170), Expect = 1e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| | |||||| ||||| |||||||| |||||||||||| || |||| |||||||
Sbjct 200540 AACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTC 200481
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| || ||||||||| | |||||||||||||| || ||||| |||||||||||
Sbjct 200480 CAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTG 200421
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|| ||| ||| ||| ||||||| ||||| ||| || || | ||| ||||||||
Sbjct 200420 GATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACTTCGAGGGTGATGGTTTT 200361
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || |||||||| ||||| ||||||||
Sbjct 200360 CCCAGTGAGAGTTTTCACAAAGATTTGCAT 200331
Score = 136 bits (150), Expect = 3e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| | |||||| ||||| |||||||| |||||||||||| || |||| |||||||
Sbjct 200084 AACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTC 200025
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| || ||||||||| | |||||||||||||| || ||||| |||||||| ||
Sbjct 200024 CAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTG 199965
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|| ||| || || ||||||| ||||| ||| || || | ||| ||||||||
Sbjct 199964 GATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGTTTT 199905
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||| || || |||||
Sbjct 199904 CCCAGTGAGAGTTTTTACGAAGATCTGCAT 199875
Score = 136 bits (150), Expect = 3e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| | |||||| ||||| |||||||| |||||||||||| || |||| |||||||
Sbjct 200768 AACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTC 200709
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| || ||||||||| | |||||||||||||| || ||||| |||||||| ||
Sbjct 200708 CAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTG 200649
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|| ||| || || ||||||| ||||| ||| || || | ||| ||||||||
Sbjct 200648 GATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGTTTT 200589
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||| || || |||||
Sbjct 200588 CCCAGTGAGAGTTTTTACGAAGATCTGCAT 200559
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210
|||||| || ||||| || || ||||| || || ||||| || || | || ||||
Sbjct 200999 TAAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGTCCTACCGTC 200940
Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270
||| || || ||||||||| | |||||||||||||| || ||||| |||||||||||
Sbjct 200939 TTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTC 200880
Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330
|| ||| |||||| ||||||| || || ||| || || | ||| |||||
Sbjct 200879 TTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGT 200820
Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||| || || |||||||| || || || |||||
Sbjct 200819 TTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200787
Score = 118 bits (130), Expect = 8e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| || ||||| || || ||||| || || ||||| || || | || |||||||
Sbjct 200312 AACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGTCCTACCGTCTTC 200253
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
|| || ||||||||| | |||||||||||||| || ||||| |||||||||||
Sbjct 200252 CAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTG 200193
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|| ||| |||||| ||||||| || || ||| || || | ||| ||||||||
Sbjct 200192 GATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTTTT 200133
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || |||||||| || || || |||||
Sbjct 200132 CCCAGTGAGAGTTTTCACGAAGATCTGCAT 200103
>seq10177
Length=3058365
Score = 109 bits (120), Expect = 4e-19
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233
||||||| || ||||||||| ||| | | | || || | |||||||||||| | |
Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 2346172
Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTT 15293
| | || ||||| || |||||||||||| ||||| || ||| ||| ||| | |
Sbjct 2346173 TGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 2346232
Query 15294 CTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15353
| ||||||||| | ||||| || | ||| ||||||||||| || || ||||| || |
Sbjct 2346233 CGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 2346292
Query 15354 AAATTTGCAT 15363
|||| |||||
Sbjct 2346293 AAATCTGCAT 2346302
>seq15293
Length=768699
Score = 95.1 bits (104), Expect = 9e-15
Identities = 162/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| ||||| ||||| ||||| || || || || ||||| |||||
Sbjct 125930 CCACCGCGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAA 125989
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | ||||||| | ||||| || || | ||||| | || || || ||
Sbjct 125990 AGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGG 126049
Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTA 15314
|||||||||||||| |||||| ||| || || |||| || || || | || ||| |
Sbjct 126050 ATTCCTTCTTTGTCCTGAATTTTAGCT-TTCACGTTTTCAATCGTGTC-CGATGCTTCGA 126107
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
| || | || || ||||| || || || ||||| |||||||||||||||
Sbjct 126108 CTTCCAGAGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCATA 126157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362111316186639
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |