Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq15293 89.7 4e-13 >seq15293 Length=768699 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| ||||| ||||| || || ||||| || | | ||| | |||| || Sbjct 126176 ACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126235 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || || |||| | |||||||||||| || | || |||||||| | Sbjct 126236 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGA 126295 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| ||| || | | | || ||| | ||| ||| | || || ||||| Sbjct 126296 ATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTG 126355 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | |||||||||||||||||||| Sbjct 126356 CCGGTGAGCGTTTTGACAAAAATTTGCAT 126384 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 18827 CTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCG 18886 || || |||| |||| ||||| ||||| ||||| || ||||| | | || | || Sbjct 125942 CTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTGCGGCCG 126001 Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946 || || |||||||| || ||| | || | |||||||||||| || | || |||||| Sbjct 126002 TCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTG 126061 Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAAT 19005 || |||||| ||| || | | | || || | | ||| || ||| | || || Sbjct 126062 TCCTGAATTTTAGCTTTCACGTTTTCAATCGTGTC-CGATGCTTCGACTTCCAGAGTGAT 126120 Query 19006 GGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || | |||||||||||||||||||| Sbjct 126121 TGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| || |||||||||||||| || | || || | |||||||||||||| ||| Sbjct 125732 GTAGATTCTTTTTGAATATTGTAGTCGGACAAAGTCCGTCCATCCTCCAGCTGTTTGCCC 125791 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || |||| ||||| || ||||| || | ||| ||||| || ||||||| ||| Sbjct 125792 GCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAATTTTCGCTTTC 125851 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | ||| || || | ||| || || | || || |||||||| || | ||| Sbjct 125852 ACGTTCTCGATCGTGTC-AGACGCTTCGACCTCCAATGTGATAGTTTTACCAGTGAGAGT 125910 Query 19024 TTTGACAAAAATTTGCAT 19041 ||||| ||||| ||||| Sbjct 125911 CTTGACGAAAATCTGCAT 125928 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || || ||||| || || ||||| || | | ||| | |||| || Sbjct 126404 ACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126463 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || || |||| | |||||||||||| || | || |||||||| | Sbjct 126464 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGA 126523 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| ||| || | | | || ||| | ||| ||| | || || ||||| Sbjct 126524 ATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTG 126583 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | |||||||||||||||||||| Sbjct 126584 CCGGTGAGCGTTTTGACAAAAATTTGCAT 126612 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || || ||||| || || ||||| || | | ||| | |||| || Sbjct 126632 ACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126691 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || || |||| | |||||||||||| || | || |||||||| | Sbjct 126692 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGA 126751 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| ||| || | | | || ||| | ||| ||| | || || ||||| Sbjct 126752 ATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTG 126811 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | |||||||||||||||||||| Sbjct 126812 CCGGTGAGCGTTTTGACAAAAATTTGCAT 126840 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || || ||||| || || ||||| || | | ||| | |||| || Sbjct 126860 ACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126919 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || || |||| | |||||||||||| || | || || ||||| | Sbjct 126920 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGA 126979 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| ||| || | ||| ||||| | ||| ||| | || || ||||| Sbjct 126980 ATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTT 127039 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | ||||||||||| ||||||||| Sbjct 127040 CCCGTCAGGGTTTTGACAAAGATTTGCATT 127069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414495095972326