Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq15293 89.7 4e-13
>seq15293
Length=768699
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||||| ||||| ||||| || || ||||| || | | ||| | |||| ||
Sbjct 126176 ACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126235
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
|||||||| || || |||| | |||||||||||| || | || |||||||| |
Sbjct 126236 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGA 126295
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012
||||| ||| || | | | || ||| | ||| ||| | || || |||||
Sbjct 126296 ATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTG 126355
Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | ||||||||||||||||||||
Sbjct 126356 CCGGTGAGCGTTTTGACAAAAATTTGCAT 126384
Score = 86.0 bits (94), Expect = 5e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 18827 CTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCG 18886
|| || |||| |||| ||||| ||||| ||||| || ||||| | | || | ||
Sbjct 125942 CTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTGCGGCCG 126001
Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946
|| || |||||||| || ||| | || | |||||||||||| || | || ||||||
Sbjct 126002 TCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTG 126061
Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAAT 19005
|| |||||| ||| || | | | || || | | ||| || ||| | || ||
Sbjct 126062 TCCTGAATTTTAGCTTTCACGTTTTCAATCGTGTC-CGATGCTTCGACTTCCAGAGTGAT 126120
Query 19006 GGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||||| || || | ||||||||||||||||||||
Sbjct 126121 TGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||| || |||||||||||||| || | || || | |||||||||||||| |||
Sbjct 125732 GTAGATTCTTTTTGAATATTGTAGTCGGACAAAGTCCGTCCATCCTCCAGCTGTTTGCCC 125791
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
|| |||| ||||| || ||||| || | ||| ||||| || ||||||| |||
Sbjct 125792 GCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAATTTTCGCTTTC 125851
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023
|| | ||| || || | ||| || || | || || |||||||| || | |||
Sbjct 125852 ACGTTCTCGATCGTGTC-AGACGCTTCGACCTCCAATGTGATAGTTTTACCAGTGAGAGT 125910
Query 19024 TTTGACAAAAATTTGCAT 19041
||||| ||||| |||||
Sbjct 125911 CTTGACGAAAATCTGCAT 125928
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||||| || || ||||| || || ||||| || | | ||| | |||| ||
Sbjct 126404 ACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126463
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
|||||||| || || |||| | |||||||||||| || | || |||||||| |
Sbjct 126464 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGA 126523
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012
||||| ||| || | | | || ||| | ||| ||| | || || |||||
Sbjct 126524 ATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTG 126583
Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | ||||||||||||||||||||
Sbjct 126584 CCGGTGAGCGTTTTGACAAAAATTTGCAT 126612
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||||| || || ||||| || || ||||| || | | ||| | |||| ||
Sbjct 126632 ACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126691
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
|||||||| || || |||| | |||||||||||| || | || |||||||| |
Sbjct 126692 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGA 126751
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012
||||| ||| || | | | || ||| | ||| ||| | || || |||||
Sbjct 126752 ATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTG 126811
Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | ||||||||||||||||||||
Sbjct 126812 CCGGTGAGCGTTTTGACAAAAATTTGCAT 126840
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||||| || || ||||| || || ||||| || | | ||| | |||| ||
Sbjct 126860 ACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126919
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
|||||||| || || |||| | |||||||||||| || | || || ||||| |
Sbjct 126920 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGA 126979
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012
||||| ||| || | ||| ||||| | ||| ||| | || || |||||
Sbjct 126980 ATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTT 127039
Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| || | ||||||||||| |||||||||
Sbjct 127040 CCCGTCAGGGTTTTGACAAAGATTTGCATT 127069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414495095972326
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |