Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq9764 102 5e-17
seq15293 100 2e-16
>seq9764
Length=1320143
Score = 102 bits (112), Expect = 5e-17
Identities = 157/222 (71%), Gaps = 14/222 (6%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG- 33213
|| || || || || | ||| || |||||||| || ||||||||||| | |||||
Sbjct 201229 CGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAA----GAGTTCT 201174
Query 33214 ---GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270
||| |||| |||||| ||| || ||||||||||| || || | || || || ||
Sbjct 201173 GCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGATTCCCTC 201114
Query 33271 TTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327
||| || || | ||| ||||| ||| ||| ||||| | || || || ||
Sbjct 201113 TTTGTCCTGAATTTTGGCC---TTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAG 201057
Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || ||||| || ||||||||||| ||||||||||||||
Sbjct 201056 GGTGATGGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCAT 201015
Score = 87.8 bits (96), Expect = 1e-12
Identities = 151/219 (69%), Gaps = 8/219 (4%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG- 33213
|||| |||| ||| | ||| || |||||||| || |||||||| || | | |||
Sbjct 200089 CGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGA----GTGTTCT 200034
Query 33214 ---GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270
||| |||| ||||| ||| || || |||||||| || || | || ||||||||
Sbjct 200033 ACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTC 199974
Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330
||| || ||| ||| || ||| || || || || || ||| || || ||
Sbjct 199973 TTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGT 199914
Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || || |||||||||||||| || |||||
Sbjct 199913 GATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 199875
Score = 87.8 bits (96), Expect = 1e-12
Identities = 151/219 (69%), Gaps = 8/219 (4%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG- 33213
|||| |||| ||| | ||| || |||||||| || |||||||| || | | |||
Sbjct 200773 CGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGA----GTGTTCT 200718
Query 33214 ---GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270
||| |||| ||||| ||| || || |||||||| || || | || ||||||||
Sbjct 200717 ACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTC 200658
Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330
||| || ||| ||| || ||| || || || || || ||| || || ||
Sbjct 200657 TTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGT 200598
Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || || |||||||||||||| || |||||
Sbjct 200597 GATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 200559
Score = 84.2 bits (92), Expect = 1e-11
Identities = 150/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||| ||||| || | || || ||||| || |||||||| || || | | |
Sbjct 200317 CGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGTCCTACCG 200258
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273
|| ||||| ||||| ||| || || |||||||| || || | || |||||||||||
Sbjct 200257 TCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTG 200198
Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | ||| ||||| ||| || ||||| || || ||| || || ||
Sbjct 200197 TCTTGGATCTTGGCC---TTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTG 200141
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || || |||||||| ||||| || |||||
Sbjct 200140 ATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200103
Score = 84.2 bits (92), Expect = 1e-11
Identities = 150/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|| || ||||| || | || || ||||| || |||||||| || || | | |
Sbjct 201001 CGTAAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGTCCTACCG 200942
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273
|| ||||| ||||| ||| || || |||||||| || || | || |||||||||||
Sbjct 200941 TCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTG 200882
Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | ||| ||||| ||| || ||||| || || ||| || || ||
Sbjct 200881 TCTTGGATCTTGGCC---TTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTG 200825
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || || |||||||| ||||| || |||||
Sbjct 200824 ATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200787
>seq15293
Length=768699
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| || | ||| || | ||||||||||||||||| || || || || ||||| |||||
Sbjct 126385 ACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGA 126444
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
| || | ||| || | || ||||| || ||||| | ||||| || | ||
Sbjct 126445 AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGG 126504
Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321
|| |||||||| || ||| ||| || ||| |||||||||| | | |||
Sbjct 126505 GATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAAC 126564
Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|||||||| || ||||| || || || ||||| || |||||||||||
Sbjct 126565 TTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| || | ||| || | ||||||||||||||||| || || || || ||||| |||||
Sbjct 126613 ACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGA 126672
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
| || | ||| || | || ||||| || ||||| | ||||| || | ||
Sbjct 126673 AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGG 126732
Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321
|| |||||||| || ||| ||| || ||| |||||||||| | | |||
Sbjct 126733 GATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAAC 126792
Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|||||||| || ||||| || || || ||||| || |||||||||||
Sbjct 126793 TTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| || | ||| || | |||||||||||||| || || || || || ||||| |||||
Sbjct 126157 ACCACCACGTAAACGGAGAACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGA 126216
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
| || | ||| || | || ||||| || ||||| | ||||| || | ||
Sbjct 126217 AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGG 126276
Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321
|| |||||||| || ||| ||| || ||| |||||||||| | | |||
Sbjct 126277 GATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAAC 126336
Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|||||||| || ||||| || || || ||||| || |||||||||||
Sbjct 126337 TTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|||||||| || ||||| |||||||| || || |||||||| | | | | ||| ||
Sbjct 127088 ACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTCTTCA 127147
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
| ||||||||| || || ||||| ||||| || | || |||||||| || || |
Sbjct 127148 AGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTGA 127207
Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340
|| ||| || ||| ||||| || | | ||| |||| || || ||||||
Sbjct 127208 ATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTT 127267
Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||| || ||||| || || ||||||||
Sbjct 127268 CCCGTCAGGGTTTTGACAAAGATTTGCAT 127296
Score = 82.4 bits (90), Expect = 5e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216
||| |||||||||| || || || || || || || |||||||| | || | |||
Sbjct 125944 CAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTGCGGCCGTC 126003
Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276
|| | || ||||| ||| || || | ||||| || | || || |||||||| ||
Sbjct 126004 TTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTC 126063
Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336
||| ||| || ||| ||||||||| | || || |||||||| || ||
Sbjct 126064 CTGAATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCGACTTCCAGAGTGATTGT 126123
Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||| || || || ||||| || |||||||||||
Sbjct 126124 TTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|||||||| || || || |||||||| || || |||||||| | | | | ||| ||
Sbjct 127316 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGACCGTCTTCA 127375
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
| ||||||||| || || ||||| ||||| || | || |||||||| || ||
Sbjct 127376 AGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGG 127435
Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340
||| |||||| | | ||| || || | | || ||||||||||| || ||
Sbjct 127436 ATCTTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAGAGTTATGGTCTTC 127495
Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| || | || || |||||||| ||||||
Sbjct 127496 CCGGTCAACGTCTTCACGAAAATCTGCATG 127525
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318717851016342
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