Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq9764 91.5 1e-13 seq15293 82.4 5e-11 >seq9764 Length=1320143 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || ||| ||||||||||| || |||||| | | | | || ||| Sbjct 199855 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTCC 199796 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || || || || || || ||||| ||||| || || |||| | |||||||||||| Sbjct 199795 AACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGG 199736 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || |||||| | | | |||||| | | ||||| || | || || ||||| Sbjct 199735 ATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCTAAGGTGATGGTTTTC 199676 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCT 44130 || || | ||| |||||||| ||||||||| || ||| Sbjct 199675 CCAGTAAGAGTTTTCACAAAGATTTGCATGATGAATCT 199638 >seq15293 Length=768699 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||||| || ||||||||||| |||||||| | ||| | || || Sbjct 127316 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGACCGTCTTCA 127375 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||| ||||| || || ||||| || ||||| || | || | ||||| |||||| Sbjct 127376 AGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGG 127435 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| ||| || | ||| ||||| | | ||| || || | || || || || Sbjct 127436 ATCTTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAGAGTTATGGTCTTC 127495 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| || |||||||| || || |||||| Sbjct 127496 CCGGTCAACGTCTTCACGAAAATCTGCATG 127525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354711103480092