Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq9764 93.3 4e-14 seq15293 87.8 2e-12 >seq9764 Length=1320143 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | || |||| ||| ||||| ||||||||||| |||||||||||| Sbjct 199875 TTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG 199816 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| || |||||||| || || || || | || | | |||||||| | Sbjct 199815 AGAGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAG 199756 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||| || || || ||| || | | | || ||| || |||| Sbjct 199755 GAATGCCTTCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCA 199696 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| |||||||| || || | ||||| ||||| |||||||| Sbjct 199695 CCTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | || |||| ||| ||||| ||||||||||| |||||||||||| Sbjct 200103 TTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG 200044 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| || ||||||| || ||||| || | || | | |||||||| | Sbjct 200043 AGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 199984 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||| || || || |||||| | | | | ||| | ||| Sbjct 199983 GAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAA 199924 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||| |||||||| || || | ||||| || || || |||||| Sbjct 199923 CTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 199874 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | || |||| ||| ||||| ||||||||||| |||||||||||| Sbjct 200787 TTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG 200728 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| || ||||||| || ||||| || | || | | |||||||| | Sbjct 200727 AGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 200668 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||| || || || |||||| | | | | ||| | ||| Sbjct 200667 GAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAA 200608 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||| |||||||| || || | ||||| || || || |||||| Sbjct 200607 CTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 200558 >seq15293 Length=768699 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || ||||| | | |||||||| | ||||||||| || || |||||||| || Sbjct 126158 CCACCACGTAAACGGAGAACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAG-- 126215 Query 20042 ATAGTTTTAGAA--TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | | ||||| | ||||| || || |||| | ||||| ||||| | Sbjct 126216 AAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAG 126275 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| |||||| |||||| | ||| | ||| | || Sbjct 126276 GGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAA 126335 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || || ||||||||||| | ||||||||||||||||||||| Sbjct 126336 CTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053 ||||| |||||||| || |||||||| || || ||||| ||||| | || Sbjct 125942 CTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTGCGGCCG 126001 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 ||||| | ||||| || ||| | || | ||||| ||||| || | ||||||||| Sbjct 126002 TCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTG 126061 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || |||||| |||||| | ||| | || | ||| ||||| || || Sbjct 126062 TCCTGAATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCGACTTCCAGAGTGATT 126121 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||||||||| | |||||||||||||||||||| Sbjct 126122 GTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || ||||| | | |||||||| | ||| ||||| || || |||||||| || Sbjct 126386 CCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAG-- 126443 Query 20042 ATAGTTTTAGAA--TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | | ||||| | ||||| || || |||| | ||||| ||||| | Sbjct 126444 AAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAG 126503 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| |||||| |||||| | ||| | ||| | || Sbjct 126504 GGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAA 126563 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || || ||||||||||| | ||||||||||||||||||||| Sbjct 126564 CTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || ||||| | | |||||||| | ||| ||||| || || |||||||| || Sbjct 126614 CCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAG-- 126671 Query 20042 ATAGTTTTAGAA--TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | | ||||| | ||||| || || |||| | ||||| ||||| | Sbjct 126672 AAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAG 126731 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| |||||| |||||| | ||| | ||| | || Sbjct 126732 GGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAA 126791 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || || ||||||||||| | ||||||||||||||||||||| Sbjct 126792 CTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || ||||||||||||||||| || ||||| ||| || ||| ||| |||| ||| Sbjct 125726 TGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGACAAAGTCCGTCCATCCTCCAGCTGT 125785 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 |||||||| |||| || || ||||||||| || | ||||||||| || |||||| Sbjct 125786 TTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAATTTTC 125845 Query 20126 TGTTTCAC 20133 |||||| Sbjct 125846 GCTTTCAC 125853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419508556115499