Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq9764 93.3 4e-14
seq15293 87.8 2e-12
>seq9764
Length=1320143
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039
|||||||||| | | || |||| ||| ||||| ||||||||||| ||||||||||||
Sbjct 199875 TTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG 199816
Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099
| ||| || |||||||| || || || || | || | | |||||||| |
Sbjct 199815 AGAGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAG 199756
Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159
| | ||||||||| || || || ||| || | | | || ||| || ||||
Sbjct 199755 GAATGCCTTCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCA 199696
Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| | ||| |||||||| || || | ||||| ||||| ||||||||
Sbjct 199695 CCTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039
|||||||||| | | || |||| ||| ||||| ||||||||||| ||||||||||||
Sbjct 200103 TTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG 200044
Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099
| ||| || ||||||| || ||||| || | || | | |||||||| |
Sbjct 200043 AGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 199984
Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159
| | ||||||||| || || || |||||| | | | | ||| | |||
Sbjct 199983 GAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAA 199924
Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
||| | ||| |||||||| || || | ||||| || || || ||||||
Sbjct 199923 CTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 199874
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039
|||||||||| | | || |||| ||| ||||| ||||||||||| ||||||||||||
Sbjct 200787 TTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG 200728
Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099
| ||| || ||||||| || ||||| || | || | | |||||||| |
Sbjct 200727 AGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 200668
Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159
| | ||||||||| || || || |||||| | | | | ||| | |||
Sbjct 200667 GAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAA 200608
Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
||| | ||| |||||||| || || | ||||| || || || ||||||
Sbjct 200607 CTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 200558
>seq15293
Length=768699
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041
|| || ||||| | | |||||||| | ||||||||| || || |||||||| ||
Sbjct 126158 CCACCACGTAAACGGAGAACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAG-- 126215
Query 20042 ATAGTTTTAGAA--TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099
| ||| | | ||||| | ||||| || || |||| | ||||| ||||| |
Sbjct 126216 AAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAG 126275
Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159
| | ||||||||||| |||||| |||||| | ||| | ||| | ||
Sbjct 126276 GGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAA 126335
Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||||| || || ||||||||||| | |||||||||||||||||||||
Sbjct 126336 CTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053
||||| |||||||| || |||||||| || || ||||| ||||| | ||
Sbjct 125942 CTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTGCGGCCG 126001
Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113
||||| | ||||| || ||| | || | ||||| ||||| || | |||||||||
Sbjct 126002 TCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTG 126061
Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173
|| |||||| |||||| | ||| | || | ||| ||||| || ||
Sbjct 126062 TCCTGAATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCGACTTCCAGAGTGATT 126121
Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||||||||||| | ||||||||||||||||||||
Sbjct 126122 GTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041
|| || ||||| | | |||||||| | ||| ||||| || || |||||||| ||
Sbjct 126386 CCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAG-- 126443
Query 20042 ATAGTTTTAGAA--TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099
| ||| | | ||||| | ||||| || || |||| | ||||| ||||| |
Sbjct 126444 AAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAG 126503
Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159
| | ||||||||||| |||||| |||||| | ||| | ||| | ||
Sbjct 126504 GGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAA 126563
Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||||| || || ||||||||||| | |||||||||||||||||||||
Sbjct 126564 CTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041
|| || ||||| | | |||||||| | ||| ||||| || || |||||||| ||
Sbjct 126614 CCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAG-- 126671
Query 20042 ATAGTTTTAGAA--TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099
| ||| | | ||||| | ||||| || || |||| | ||||| ||||| |
Sbjct 126672 AAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAG 126731
Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159
| | ||||||||||| |||||| |||||| | ||| | ||| | ||
Sbjct 126732 GGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAA 126791
Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||||| || || ||||||||||| | |||||||||||||||||||||
Sbjct 126792 CTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840
Score = 82.4 bits (90), Expect = 6e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065
|| ||||||||||||||||| || ||||| ||| || ||| ||| |||| |||
Sbjct 125726 TGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGACAAAGTCCGTCCATCCTCCAGCTGT 125785
Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125
|||||||| |||| || || ||||||||| || | ||||||||| || ||||||
Sbjct 125786 TTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAATTTTC 125845
Query 20126 TGTTTCAC 20133
||||||
Sbjct 125846 GCTTTCAC 125853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419508556115499
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |