Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq9873 89.7 4e-13 >seq9873 Length=3435365 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015 |||| | | |||||| | | ||||||||||| || ||||| || ||||| | ||| Sbjct 2563433 TTTTCAAATCCTAATGCAACGAACAATCTGTCCGCGACAAATTCGATGTAATTACACATA 2563374 Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCT 13075 | || ||||| |||||||||| ||||| | || | ||||||||| | |||||| Sbjct 2563373 AGTGTGCAATTCATACCTATTAATTCGACAGGTAATGCCTGTGTTAAAAATTCTTTTTCA 2563314 Query 13076 ATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT--- 13132 || || || || || || | || || || | || | ||| |||| || ||| | Sbjct 2563313 ATTTCCACGGCATCCATTA-TA-ATCGATT-TCACATGCTCAAATGATGGCTTTTGTATG 2563257 Query 13133 AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCC 13173 | ||| |||||||| | ||| || |||||||| || ||||| Sbjct 2563256 ATATGTTTAAACATTAAACAGGCGAAATCACAATGTAATCC 2563216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430901620295358