Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq9764 172 1e-37 seq15293 165 2e-35 seq9873 100 7e-16 >seq9764 Length=1320143 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | || || ||||| | ||| |||||||| ||||| || || || Sbjct 199876 ATTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCG 199817 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||||||||| | || || ||||| || || | | |||||||||||| Sbjct 199816 GAGAGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGA 199757 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| || ||||| ||||| ||||| |||| ||||| || ||| Sbjct 199756 GGAATGCCTTCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCC 199697 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||| || || || || |||||||| ||||| ||||| || ||||| Sbjct 199696 ACCTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647 Score = 168 bits (186), Expect = 2e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | || || ||||| | ||| |||||||| ||||| || || || Sbjct 200104 ATTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCG 200045 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||||||||| || || || ||||| || || | | |||||||||||| Sbjct 200044 GAGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGA 199985 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| || ||||| ||||| || ||||||| ||||| | ||| Sbjct 199984 GGAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCA 199925 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || || ||||| || |||||||| || ||||||||| Sbjct 199924 ACTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 199874 Score = 168 bits (186), Expect = 2e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | || || ||||| | ||| |||||||| ||||| || || || Sbjct 200788 ATTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCG 200729 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||||||||| || || || ||||| || || | | |||||||||||| Sbjct 200728 GAGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGA 200669 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| || ||||| ||||| || ||||||| ||||| | ||| Sbjct 200668 GGAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCA 200609 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || || ||||| || |||||||| || ||||||||| Sbjct 200608 ACTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 200558 Score = 163 bits (180), Expect = 7e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| || | ||| |||||||| || || || || ||||| |||||||| |||||||| Sbjct 201223 ACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCGTCTTCC 201164 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || ||||| || |||| | |||||||| ||||| ||||| ||||| |||||| Sbjct 201163 AGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGATTCCCTCTTTGTCCTGA 201104 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || || ||||| ||||| | ||| || || ||| || || || || || || ||| Sbjct 201103 ATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGGGTGATGGTTTTA 201044 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||||||| ||||| || || || |||||| Sbjct 201043 CCAGTAAGAGTTTTCACGAAAATTTGCATT 201014 Score = 159 bits (176), Expect = 8e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | || || ||||| | ||| |||||||| ||||| || || || Sbjct 200560 ATTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCG 200501 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||||||||| || || || ||||| || || | | |||||||||||| Sbjct 200500 GAGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGA 200441 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || ||||| || || |||||||||| ||||| | ||| Sbjct 200440 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCA 200381 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || || ||||| || ||||| ||||| || |||||| Sbjct 200380 ACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCATT 200330 Score = 150 bits (166), Expect = 4e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | || || | || | |||||||||||||||||||| ||||| Sbjct 200332 ATTCCTCCTCGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCT 200273 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || ||||||||||| | || || ||||| || || | | |||||||||||| Sbjct 200272 GAGAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGA 200213 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || ||||| || ||||| ||||||| || || | ||| Sbjct 200212 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCA 200153 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || || ||||| || ||||| || || ||||||||| Sbjct 200152 ACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCATT 200102 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||||||||||||||| ||||| || || || ||||||||||| | || || ||| Sbjct 200983 GTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGTCCTACCGTCTTCCAACTGCTTGCCA 200924 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | |||||||||||||| || |||||||| || || ||||| || ||| Sbjct 200923 GCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTT 200864 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||||| || || | ||| || || || || || || || ||||| || ||| Sbjct 200863 ACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTT 200804 Query 104543 TTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 200803 TTCACGAAGATCTGCATT 200786 >seq15293 Length=768699 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||||| || | |||||| || || | |||||||||||| |||||||| ||||| | Sbjct 125700 TTCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGG 125759 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | | ||| | || || || || ||||| || || ||||| || || |||||||| |||| Sbjct 125760 ACAAAGTCCGTCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAG 125819 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | || ||||||||||| ||||| || ||||| || || || | || || | ||| | Sbjct 125820 GAATGCCTTCTTTATCTTGAATTTTCGCTTTCACGTTCTCGATCGTGTCAGACGCTTCGA 125879 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| | ||| ||||| |||||||| || || || || || |||||||| Sbjct 125880 CCTCCAATGTGATAGTTTTACCAGTGAGAGTCTTGACGAAAATCTGCAT 125928 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | ||| | ||| || | |||||| || |||||||| ||||| ||||| ||| Sbjct 127295 ATTCCACCACGTAGACGAAGAACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCA 127354 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||||||||| ||||| ||||| || || || | | ||| |||||||| Sbjct 127355 GAGAGAGTACGACCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGT 127414 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || |||||||||||||| || || | |||||| || || Sbjct 127415 GGGATGCCTTCCTTATCTTGGATCTTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCG 127474 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| || || | || || || || |||||||| Sbjct 127475 ACTTCCAGAGTTATGGTCTTCCCGGTCAACGTCTTCACGAAAATCTGCAT 127524 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| |||||||| ||||| ||||| || || | |||||||| || |||||||| Sbjct 125960 GTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTGCGGCCGTCTTCAAGCTGTTTTCCG 126019 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||| ||||| ||||| ||||||||||| |||||||| || ||||| Sbjct 126020 GCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCCTGAATTTTAGCTTTC 126079 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | || || | ||| || || || || || || || || || |||||| Sbjct 126080 ACGTTTTCAATCGTGTCCGATGCTTCGACTTCCAGAGTGATTGTTTTGCCGGTGAGTGTT 126139 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 126140 TTGACAAAAATTTGCAT 126156 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| ||||||||||| ||||| || || |||||||| || || | |||||| Sbjct 126173 AGAACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCT 126232 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || |||||||| || ||||||| ||||| ||||| ||||| ||||||||||| || Sbjct 126233 TCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCT 126292 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| || ||||| | || ||| | || || || || || || || Sbjct 126293 TGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTT 126352 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| ||||| || ||||| Sbjct 126353 TTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| ||||| ||||| ||||| || || |||||||| || || | |||||| Sbjct 126401 AGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCT 126460 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || |||||||| || ||||||| ||||| ||||| ||||| ||||||||||| || Sbjct 126461 TCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCT 126520 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| || ||||| | || ||| | || || || || || || || Sbjct 126521 TGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTT 126580 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| ||||| || ||||| Sbjct 126581 TTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| ||||| ||||| ||||| || || |||||||| || || | |||||| Sbjct 126629 AGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCT 126688 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || |||||||| || ||||||| ||||| ||||| ||||| ||||||||||| || Sbjct 126689 TCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCT 126748 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| || ||||| | || ||| | || || || || || || || Sbjct 126749 TGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTT 126808 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| ||||| || ||||| Sbjct 126809 TTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840 >seq9873 Length=3435365 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 ||||| ||| || | | || || ||||| | |||||||| ||||| || ||||| Sbjct 2562155 TTTATTTCTCATGTCTTAGCATTCTTTGCCGCATCCGATGGTATTGTTAATGAGAATCTG 2562214 Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 | |||| ||| ||||||||||| | ||| | ||||| | |||||||| || || || Sbjct 2562215 ATTGAGAGATTCAGTCAAGAGGTAAAAATTACCGAAGCACGTTGTTTTTATGGCTTTCAA 2562274 Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGAT 269020 || || |||||||| || ||||| |||||||| | | | || || || ||||| | Sbjct 2562275 ATTGCAATAGAAAACATCCATTCTGAGATGTATTCTTTGCTCATTGAAACGTATATTTCT 2562334 Query 269021 GATAACAACGAAAAGAAA 269038 ||| || |||||| || Sbjct 2562335 GATCCAAAAGAAAAGTAA 2562352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151171524501332