Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq10177 109 5e-19 seq9764 100 2e-16 >seq10177 Length=3058365 Score = 109 bits (120), Expect = 5e-19 Identities = 145/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 48539 TTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATT 48598 |||||||| |||||||| | || || | ||||||||||| || || || | || Sbjct 2346115 TTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGATG 2346174 Query 48599 AAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCT 48658 | ||||| ||||| || | | |||||||||| || || ||||| | | | Sbjct 2346175 AGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 2346234 Query 48659 ATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAA 48718 |||||||||| || ||| ||||| || ||||||||||| ||||| |||||||| ||| Sbjct 2346235 ATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAAA 2346294 Query 48719 ATCTGCATCGTGTCTTGATC 48738 |||||||| ||| | ||||| Sbjct 2346295 ATCTGCATGGTGGC-TGATC 2346313 >seq9764 Length=1320143 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | | ||| ||||| || |||||| || ||||| ||||||||||||| Sbjct 201242 ACCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGA 201183 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || |||| ||||| ||||| || || | |||||||| || ||||| || Sbjct 201182 AAGAGTTCTGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGG 201123 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | || |||||| |||||| ||| | | ||||| || | || || || Sbjct 201122 GATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAG-CTTCGA 201064 Query 48679 C-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | |||| || ||||||||||| || ||||||||||| ||||| ||||| Sbjct 201063 CTTCGAGGGTGATGGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCAT 201015 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||||||| || ||||||||||||||||| | | | || |||| |||| ||| Sbjct 199850 ATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTCCAACTG 199791 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| || | || ||||| || ||||| || | | ||| || || || || Sbjct 199790 CTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGGATCTT 199731 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||| | | |||| ||||| | || ||| ||| | || |||||||| || || Sbjct 199730 GGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCTAAGGTGATGGTTTTCCCAGT 199671 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 |||||||||||||| || ||||| Sbjct 199670 AAGAGTTTTCACAAAGATTTGCAT 199647 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||||||| || ||||||||||||||||| | | | || |||| |||||||| Sbjct 200534 ATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTCCAGCTG 200475 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || ||||| || ||||| || | | ||| ||||| || || Sbjct 200474 CTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTT 200415 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC-TCGACTGTTATGGTTTTACCGG 48701 ||| | | |||| ||||| | || || | | |||| || |||||||| || | Sbjct 200414 GGCCTTCACATTTTCTATTGTATCAG-AGGCTTCAACTTCGAGGGTGATGGTTTTCCCAG 200356 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||||||||||| || ||||| Sbjct 200355 TGAGAGTTTTCACAAAGATTTGCAT 200331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421172244229379