Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq10374 105 8e-18 seq10275 87.8 2e-12 >seq10374 Length=1045362 Score = 105 bits (116), Expect = 8e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 164783 TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATA 164842 |||||||| |||||||||||||| | ||| | ||||| |||||||| ||| ||||||| Sbjct 318135 TTCATGATACAGTGGTTAATCAGCTTCTTGCCAAAATTGATGGTGTCGAACAGTTAAATA 318194 Query 164843 ATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGAC 164902 | ||| | || | |||||||| ||| || ||| | || ||||| ||||| ||| ||| Sbjct 318195 ACATTCTTGTTATTGGTATGACTAACAGAAGAGATATGATCGATGAGGCTTTGTTAAGAC 318254 Query 164903 CTGGTCGATTAGA 164915 |||| |||| || Sbjct 318255 CTGGCAGATTGGA 318267 Score = 98.7 bits (108), Expect = 1e-15 Identities = 214/314 (68%), Gaps = 10/314 (3%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| ||||| | ||||||| | ||||| | ||| || ||| |||||| Sbjct 317622 ATTGGGATTTTCAGAAAATGGGTATTGGTGGCTTGGATAAGGAGTTTAGCGCCATTTTCC 317681 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCG-AAATAATaaaaaaaTTAGGCTGTAAA 164511 || |||| ||||| || | | |||| | || |||| | | |||| || || || Sbjct 317682 GAAGAGCCTTTGCATCCCG-TGTTTTCCCAACGGAAATTGTCACTCAATTGGGTTGCAAG 317740 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 ||| ||||||||||||| || ||||||| |||||| || || || ||||||||||| Sbjct 317741 CATGTAAAAGGAATTTTGCTATATGGACCACCTGGTACAGGAAAGACGTTAATGGCTCGG 317800 Query 164572 TGCAT-TGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATT 164627 || | ||| | |||||| | || ||| |||||||| |||||||| || | Sbjct 317801 CAAATAGGAACAA--TGTTAAATGCAAGGGAACCG--AAAATTGTAAATGGTCCACAAAT 317856 Query 164628 ATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGA 164687 || | |||||||| || ||| || |||||| | |||| || || || || || Sbjct 317857 TTTAGATAAATATGTTGGAGAGAGCGAGGCTAATATCAGAAGATTATTCGCTGAAGCAGA 317916 Query 164688 AGAAGAACAAAAGA 164701 ||| ||| |||||| Sbjct 317917 AGAGGAAGAAAAGA 317930 >seq10275 Length=574352 Score = 87.8 bits (96), Expect = 2e-12 Identities = 177/263 (67%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 7141 ATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCAT 7200 ||||| || ||| ||||| || || | | | || | ||| |||||||||| ||| Sbjct 359869 ATACCTTGTCCTGTATAATCTGTGTGCATGTCTCTGTATTCAGCACCAAAATGTCGCCAC 359928 Query 7201 TGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGATTT 7260 || || ||||| | ||| ||||||||||| || || | || | ||||||| | || | Sbjct 359929 TGGAAACCATAGACAGGTCCTAAATCACCCTCCTCTCTATCAGTAAATCCACAAGAATCT 359988 Query 7261 AAATTAGATTTTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAAATTTAAA 7320 || | ||| |||| |||||||||| || | | || | || || | | Sbjct 359989 AAGAAGGCACGTGAACCATTTTCATCCCAAATGTGAATACCCTTATCTGTCAATTCTTTG 360048 Query 7321 GAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATT 7380 |||||||| |||||||| | ||||| || ||||| || || | | | ||||| || | | Sbjct 360049 GAATTTGTTGATCCTTTGATAAACCACAACAGTTCCTCAACCACTGCTCGCCAGAATACT 360108 Query 7381 CTTTTTGTAGTGAATAAAGGGAA 7403 ||| || || | ||| || || Sbjct 360109 TGTTTAGTTGTCAGTAATGGAAA 360131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595757451056400