Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq10069 232 4e-56 >seq10069 Length=548108 Score = 232 bits (256), Expect = 4e-56 Identities = 378/542 (70%), Gaps = 2/542 (0%) Strand=Plus/Plus Query 3604 GAATGATGGATCAAATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTT 3663 ||||| || | ||||||||| | || || || || || || ||||||||||||||||| Sbjct 436737 GAATGTTGATCCCAATGAATTGTTGTACTTCGCAGATGTTTGTGCTGGTCCAGGTGGTTT 436796 Query 3664 CAGTGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACG 3723 || |||||| | || | |||||||| ||| || |||||| | ||| | || || Sbjct 436797 TAGCGAATATGTTTTGTCAAGAAAGAAGTGGCATGCCAAAGGATTTGGATTCACTTTGAA 436856 Query 3724 CGaaaaaaaTGATTTTCAACTGAACAGATTT-TACGATAACTTTTCGGAAACTTTACACC 3782 || ||||||||||| | || | ||||| | | | | | |||||||| || | Sbjct 436857 GAAAGAAAATGATTTTAAGTTGGAT-GATTTCTTTGCTGGCCCATGTGAAACTTTTCATC 436915 Query 3783 CGTATTATGGTCCGCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTT 3842 | | ||| ||||| | |||| || | | || |||||||| || | ||| Sbjct 436916 CATTTTACGGTCCCAAAGAAAATGGAGATGTATTTGATGAGCAAAATCAAAAGGAGTTTA 436975 Query 3843 GTGAAATGATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTG 3902 | || | |||| | |||| | || ||||| |||||||| |||||| | ||||| | Sbjct 436976 GATCGTTGGTGATGAGACATACTAATGGTAAAGGCGTACATTTCATGATGTCGGACGGAG 437035 Query 3903 GGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGT 3962 | || || || || |||||||||||||| || || || |||||||| | | ||| | | Sbjct 437036 GATTTTCAGTGGAAGGTCAAGAAAATATACAGGAGATTTTATCGAAGCAATTATATCTAT 437095 Query 3963 GTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTT 4022 |||| || ||| | || |||||||| | || ||||| |||| ||||| ||| | | Sbjct 437096 GTCAGTGCTTAGTGGCGTTGATGATAGTGAGACCAGGTGGACATTTTGTTACAAAACTGT 437155 Query 4023 TCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATC 4082 | ||| | |||||||||||||| ||||| | || |||||||||||| | |||| | Sbjct 437156 TTGATCTGTTTACACCTTTTAGCGCTGGACTTGTTTATTTGATGTATCATTGTTTTGAAA 437215 Query 4083 GTATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTTGGTGT 4142 |||||| |||||||| || || | || |||| || ||||| ||| | || ||| | | Sbjct 437216 GTATTTCAATTTTCAAGCCCAATACTTCCAGACCAGCTAATTCAGAACGTTACTTGATCT 437275 Query 4143 GT 4144 || Sbjct 437276 GT 437277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276501765126637