Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq9983 129 3e-25
seq9741 122 5e-23
seq14054 118 6e-22
seq15162 116 2e-21
>seq9983
Length=1335725
Score = 129 bits (142), Expect = 3e-25
Identities = 89/98 (91%), Gaps = 4/98 (4%)
Strand=Plus/Minus
Query 11432 TATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491
|||| ||||| ||||||| |||||||||||||| |||||||||| ||||||||||||
Sbjct 46907 TATA-AATTA-TAAAAAA--AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGT 46852
Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||||| ||||||||||||||||||||
Sbjct 46851 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 46814
Score = 118 bits (130), Expect = 6e-22
Identities = 78/86 (91%), Gaps = 1/86 (1%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||| || || ||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 46536 AAAAGAT-AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 46478
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 46477 GCTCTAACCAACTGAGCTAATGGGCC 46452
>seq9741
Length=2473267
Score = 122 bits (134), Expect = 5e-23
Identities = 83/93 (89%), Gaps = 1/93 (1%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
||||| |||||| || ||||||||||| |||||||||| |||||||||||||||||
Sbjct 2056818 AATTAGGAAAAAAA-AACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 2056760
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||| ||||||||||||||||||||
Sbjct 2056759 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 2056727
>seq14054
Length=5647191
Score = 118 bits (130), Expect = 6e-22
Identities = 78/86 (91%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| || ||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 5109693 AAAAAA--AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 5109750
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 5109751 GCTCTAACCAACTGAGCTAATGGGCC 5109776
>seq15162
Length=2294684
Score = 116 bits (128), Expect = 2e-21
Identities = 77/86 (90%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1056523 AAAAAATATGTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 1056582
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 1056583 GCTCTAACCAACTGAGCTAATGGGCC 1056608
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261442188295804
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |