Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq9983 129 3e-25 seq9741 122 5e-23 seq14054 118 6e-22 seq15162 116 2e-21 >seq9983 Length=1335725 Score = 129 bits (142), Expect = 3e-25 Identities = 89/98 (91%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 11432 TATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 |||| ||||| ||||||| |||||||||||||| |||||||||| |||||||||||| Sbjct 46907 TATA-AATTA-TAAAAAA--AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGT 46852 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||||||||||||||||||| Sbjct 46851 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 46814 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| || || ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 46536 AAAAGAT-AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 46478 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 46477 GCTCTAACCAACTGAGCTAATGGGCC 46452 >seq9741 Length=2473267 Score = 122 bits (134), Expect = 5e-23 Identities = 83/93 (89%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||| |||||| || ||||||||||| |||||||||| ||||||||||||||||| Sbjct 2056818 AATTAGGAAAAAAA-AACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 2056760 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 2056759 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 2056727 >seq14054 Length=5647191 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 5109693 AAAAAA--AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 5109750 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 5109751 GCTCTAACCAACTGAGCTAATGGGCC 5109776 >seq15162 Length=2294684 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1056523 AAAAAATATGTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 1056582 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 1056583 GCTCTAACCAACTGAGCTAATGGGCC 1056608 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261442188295804