Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq14986 221 2e-53
seq15016 183 5e-42
seq5746 156 7e-34
seq11709 147 3e-31
seq898 86.0 1e-12
>seq14986
Length=1518687
Score = 221 bits (244), Expect = 2e-53
Identities = 209/267 (78%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| | | | |||||| ||||||||||| || ||||||||||| ||||||
Sbjct 531125 GCGAAGCGTCACAGGAAAGTTCTTCGCGATAACATCCAGGGTATCACCAAGCCGGCTATC 531184
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||||||||| |||||||| ||||||||| |||| || ||| |||| || || | |
Sbjct 531185 CGTCGTCTGGCTCGACGTGGTGGCGTCAAGCGTATCTCCGGCTTGATCTACGAGGAAACT 531244
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||| ||||| |||||||| ||| |||||| | |||||| | ||| |||||
Sbjct 531245 CGTGGTGTGCTGAAGGTCTTCCTCGAGAACGTTATTCGCGATGCTGTAACCTACACCGAA 531304
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| ||| | ||||| || || ||||||| ||||||| || ||||||||||||||
Sbjct 531305 CACGCGAAAAGGAAGACCGTAACTGCCATGGACGTCGTCTACGCCCTGAAACGTCAAGGC 531364
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | | || || ||||| |||||
Sbjct 531365 AGAACTCTATACGGCTTTGGTGGTTAA 531391
>seq15016
Length=712975
Score = 183 bits (202), Expect = 5e-42
Identities = 184/239 (77%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||| | ||||| | | ||||| ||||||||||| || ||||||||||||||||||
Sbjct 693319 GCGAAGAGACATCGTAAAGTACTTCGTGATAACATCCAGGGTATCACCAAGCCAGCTATC 693260
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||| |||| ||||||||||||||||||||| |||| ||||| | || || ||||
Sbjct 693259 CGTCGTTTGGCACGTCGTGGTGGAGTCAAGCGTATCTCCGGATTAATTTACGAGGAGACA 693200
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||| ||||| | || | | | |||||| | ||| || | ||| ||||||
Sbjct 693199 CGTGGTGTACTGAAGGTGTTTTTAGAAAACGTTATTCGTGACGCGGTTACCTACACCGAG 693140
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| || ||| | |||||||| || ||||||| ||||||| || ||||||| |||||
Sbjct 693139 CATGCGAAAAGAAAGACTGTGACTGCCATGGACGTCGTCTACGCCCTGAAACGCCAAGG 693081
>seq5746
Length=287
Score = 156 bits (172), Expect = 7e-34
Identities = 157/204 (77%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||||| ||||||||||| || ||||||||||| |||||||||||||||||||| |||||
Sbjct 1 TCTTCGCGATAACATCCAGGGTATCACCAAGCCGGCTATCCGTCGTCTGGCTCGACGTGG 60
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
||||||||||||| |||| ||| |||| || | | |||| ||| |||||| |||
Sbjct 61 TGGAGTCAAGCGTATCTC----TTGATCTACGAGAAAACTCGTAGTGTACTGAAGAACTT 116
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
||| |||| | |||| | ||| || | || ||||| |||| ||| | ||||| ||
Sbjct 117 CCTAAAGAACATTATTCGAGATTCTATGACATACACCGAATACGCGAAAAGAAAGACAGT 176
Query 16633 CACCTCCATGGATATCGTCTATGC 16656
|| ||||||| |||| || ||
Sbjct 177 GACTACCATGGACGTCGTTTACGC 200
>seq11709
Length=2490500
Score = 147 bits (162), Expect = 3e-31
Identities = 179/244 (73%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| |||||||||||||| |||||||||||||| || ||||| |||| | ||||| ||
Sbjct 695306 CGTGATAACATCCAAGGTATCACCAAGCCAGCCATTCGTCGATTGGCAAGACGTGGCGGT 695365
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| | ||||| ||| | || ||||||| | | ||| |||| |||| ||
Sbjct 695366 GTCAAGCGTATTTCTGGCTTGATATACGAAGAGACCAGAGGTGTCCTGAAAGTCTTTCTG 695425
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
| | ||| |||| |||||| | ||||||||| ||||| || | |||||||| ||
Sbjct 695426 GAAAACGTCATCCGTGATGCCGTAACCTATACCGAACACGCCAAGAGGAAGACTGTAACA 695485
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696
| ||||| | ||||| || |||||||||| || | | | || ||||| || ||
Sbjct 695486 GCTATGGACGTGGTCTACGCTCTGAAACGTCAGGGAAGAACTCTCTACGGTTTCGGTGGT 695545
Query 16697 TAAT 16700
||||
Sbjct 695546 TAAT 695549
>seq898
Length=206
Score = 86.0 bits (94), Expect = 1e-12
Identities = 66/78 (85%), Gaps = 3/78 (4%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| || | |||||| ||||||||||| || ||||||||||| ||||||
Sbjct 132 GCGAAGCGTCA---CAAAGTTCTTCGCGATAACATCCAGGGTATCACCAAGCCGGCTATC 188
Query 16493 CGTCGTCTGGCTCGTCGT 16510
|||||||||||||| |||
Sbjct 189 CGTCGTCTGGCTCGACGT 206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79061138872647
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |