Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq14986 221 2e-53 seq15016 183 5e-42 seq5746 156 7e-34 seq11709 147 3e-31 seq898 86.0 1e-12 >seq14986 Length=1518687 Score = 221 bits (244), Expect = 2e-53 Identities = 209/267 (78%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| ||||||||||| || ||||||||||| |||||| Sbjct 531125 GCGAAGCGTCACAGGAAAGTTCTTCGCGATAACATCCAGGGTATCACCAAGCCGGCTATC 531184 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||| |||||||| ||||||||| |||| || ||| |||| || || | | Sbjct 531185 CGTCGTCTGGCTCGACGTGGTGGCGTCAAGCGTATCTCCGGCTTGATCTACGAGGAAACT 531244 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| |||||||| ||| |||||| | |||||| | ||| ||||| Sbjct 531245 CGTGGTGTGCTGAAGGTCTTCCTCGAGAACGTTATTCGCGATGCTGTAACCTACACCGAA 531304 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||| || || ||||||| ||||||| || |||||||||||||| Sbjct 531305 CACGCGAAAAGGAAGACCGTAACTGCCATGGACGTCGTCTACGCCCTGAAACGTCAAGGC 531364 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || || ||||| ||||| Sbjct 531365 AGAACTCTATACGGCTTTGGTGGTTAA 531391 >seq15016 Length=712975 Score = 183 bits (202), Expect = 5e-42 Identities = 184/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||||| ||||||||||| || |||||||||||||||||| Sbjct 693319 GCGAAGAGACATCGTAAAGTACTTCGTGATAACATCCAGGGTATCACCAAGCCAGCTATC 693260 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| ||||||||||||||||||||| |||| ||||| | || || |||| Sbjct 693259 CGTCGTTTGGCACGTCGTGGTGGAGTCAAGCGTATCTCCGGATTAATTTACGAGGAGACA 693200 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | || | | | |||||| | ||| || | ||| |||||| Sbjct 693199 CGTGGTGTACTGAAGGTGTTTTTAGAAAACGTTATTCGTGACGCGGTTACCTACACCGAG 693140 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||| | |||||||| || ||||||| ||||||| || ||||||| ||||| Sbjct 693139 CATGCGAAAAGAAAGACTGTGACTGCCATGGACGTCGTCTACGCCCTGAAACGCCAAGG 693081 >seq5746 Length=287 Score = 156 bits (172), Expect = 7e-34 Identities = 157/204 (77%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| || ||||||||||| |||||||||||||||||||| ||||| Sbjct 1 TCTTCGCGATAACATCCAGGGTATCACCAAGCCGGCTATCCGTCGTCTGGCTCGACGTGG 60 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||||||||||| |||| ||| |||| || | | |||| ||| |||||| ||| Sbjct 61 TGGAGTCAAGCGTATCTC----TTGATCTACGAGAAAACTCGTAGTGTACTGAAGAACTT 116 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| |||| | |||| | ||| || | || ||||| |||| ||| | ||||| || Sbjct 117 CCTAAAGAACATTATTCGAGATTCTATGACATACACCGAATACGCGAAAAGAAAGACAGT 176 Query 16633 CACCTCCATGGATATCGTCTATGC 16656 || ||||||| |||| || || Sbjct 177 GACTACCATGGACGTCGTTTACGC 200 >seq11709 Length=2490500 Score = 147 bits (162), Expect = 3e-31 Identities = 179/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||||||||| |||||||||||||| || ||||| |||| | ||||| || Sbjct 695306 CGTGATAACATCCAAGGTATCACCAAGCCAGCCATTCGTCGATTGGCAAGACGTGGCGGT 695365 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| | ||||| ||| | || ||||||| | | ||| |||| |||| || Sbjct 695366 GTCAAGCGTATTTCTGGCTTGATATACGAAGAGACCAGAGGTGTCCTGAAAGTCTTTCTG 695425 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | ||| |||| |||||| | ||||||||| ||||| || | |||||||| || Sbjct 695426 GAAAACGTCATCCGTGATGCCGTAACCTATACCGAACACGCCAAGAGGAAGACTGTAACA 695485 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | ||||| | ||||| || |||||||||| || | | | || ||||| || || Sbjct 695486 GCTATGGACGTGGTCTACGCTCTGAAACGTCAGGGAAGAACTCTCTACGGTTTCGGTGGT 695545 Query 16697 TAAT 16700 |||| Sbjct 695546 TAAT 695549 >seq898 Length=206 Score = 86.0 bits (94), Expect = 1e-12 Identities = 66/78 (85%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | |||||| ||||||||||| || ||||||||||| |||||| Sbjct 132 GCGAAGCGTCA---CAAAGTTCTTCGCGATAACATCCAGGGTATCACCAAGCCGGCTATC 188 Query 16493 CGTCGTCTGGCTCGTCGT 16510 |||||||||||||| ||| Sbjct 189 CGTCGTCTGGCTCGACGT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79061138872647