Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_006657.1
Length=19820
Score E
Sequences producing significant alignments: (Bits) Value
seq15079 149 8e-32
seq9966 109 7e-20
seq9346 109 7e-20
seq15352 96.9 4e-16
>seq15079
Length=60444
Score = 149 bits (164), Expect = 8e-32
Identities = 521/797 (65%), Gaps = 41/797 (5%)
Strand=Plus/Plus
Query 12199 CACCATCTGGTTCTTGATGTTTGATGATATTCTTTCATCAAAGAATGCCATAGCTACAGT 12258
|||||||| || |||| |||||| ||||||||||||| | | ||||||||
Sbjct 10668 CACCATCTTACGTTTTATGTCCAATGATACCTTTTCATCAAAGAAAGATAATGCTACAGT 10727
Query 12259 TTCTGGGTTTAAATACCACAAATGCATGCTAAATTTTTTCAATGCCACTTCAGATATTTT 12318
||| || || | ||||||||| || | |||||||| |||||| || || ||||||||
Sbjct 10728 TTCGGGATTCAGATACCACAAGTGATTACTAAATTTCCTCAATGTAACATCTGATATTTT 10787
Query 12319 AGCATCTGTCGATTGATAATCAATAAGTTCCTTTAAAAATGATAAATCATTATTTGGAGC 12378
||| | | || || ||| |||| || | ||| ||||||| ||| ||||
Sbjct 10788 TTTATCGATAGCTTTGTATTCATATAGTTTTTTCAGGAATTGTAAATCAAGATTCGGAG- 10846
Query 12379 TTCAGA---TGCGAGAGGACAAGTGAACCATGCTTTGATATACACTGTAGCAATAAAAAC 12435
|||| ||||| |||| |||||||| |||| | || | | |||||||||
Sbjct 10847 --CAGATATTGCGACAGGAGTGGTGAACCAAGCTTCCACGTATATCATCACAATAAAAAT 10904
Query 12436 ACAAATTTCAGAAACGGATTTGATTAATT-TCACCGTCATTTTGAATTGTTTACGAAATA 12494
|||| |||| || | | || || | | | ||| | ||||| | || ||||
Sbjct 10905 ACAAGTTTCTCGAATAGCCACAAATATTTCTGAAC-TCAATGAAAATTGGTCTCGGAATA 10963
Query 12495 AAAATATTTTTATAGTA-TATATGGCTTTTGCCATCCACCTAGCGTGGTGGAATGCACCC 12553
|||| ||||| || | ||||| || || | |||||| | || || ||||| || ||
Sbjct 10964 GGAATACTTTTA-AGCAGTATATCGCCTTCGACATCCAACGTGCATGATGGAAAGCGCCA 11022
Query 12554 GGTTTTCGAAATTTTACTTAACTGCAGGGA----ACTTTACCAATAAATATCTGAACAAG 12609
|| | |||||||| || | || ||| | || | || | |||||| || |
Sbjct 11023 GGATAACGAAATTTAAC--ATCTTGAGGTAAACGACGT--CCTAAAAATATGAGAGTCAA 11078
Query 12610 CTCCAAAAGTTCCCGGTAGTCTTCCCTTGGTTG-----ATTTGAATCAAGTTGCTTTTGG 12664
|| | | ||| |||||| ||||| ||||| | || ||| | || | |||
Sbjct 11079 ATCTATTAACTCCTTGTAGTCGTCCCTAGGTTGGACGAACTTCAAT-ATGTCTCATTTAC 11137
Query 12665 ATAAAGTGATTAATGTCATCAATATGAT--TTTGT-ATTTTTTCTTGCACATACGAATCT 12721
||| || | || || ||||| | |||| | || | || ||| | ||||
Sbjct 11138 ATACGTTG--TTATCCTTTCGATATGTTCAGTTGTAACATTATTTTTCACCCTCTGATCT 11195
Query 12722 TCAATCCCA-TTAGAA-----TATTGACTTATATCAATTTCGCCCCAGCTCTCTCGAAAT 12775
||||| ||| || | | ||||| ||| || |||| ||| ||||||||
Sbjct 11196 TCAATTCCACTTCGGAACGCCAATTGA-TTAATTCCATTT-----CAGTCATCTCGAAAG 11249
Query 12776 CTTTTAAATAAAGGTACATCAGGACCTGAGGTTGTAGGTATTTTAAGTTCAAAAACACCC 12835
| ||||| | ||||| | ||||| | || | ||||| |||| |||||| ||||
Sbjct 11250 TTCTTAAAAATTGGTACGTTGGGACCAGTTGTGGAAGGTAATTTACATTCAAATACACAA 11309
Query 12836 CTGAGGATAAGTTCAAATATGTGATGCCTGCAAGGCAAATACAATAGttttttttCAAGC 12895
| || || | ||| | ||||| |||||||| || || || || | || |||| |
Sbjct 11310 CGTAGAATTAATTCGTAGATGTGGTGCCTGCATGGAAAGTATAAAATGTTCCTTTCGAAT 11369
Query 12896 AACCGTTCCAGTGAAACTGCAGCTCCTTTACTTGATCCTAGATTTGCAGCAGTAGTATCA 12955
|| || ||||| |||||| ||||| || || |||||||| | |||||| |||||
Sbjct 11370 AAACGCTCCAGAATAACTGCTGCTCCATTCGTTTTACCTAGATTAGAAGCAGTTGTATCG 11429
Query 12956 CAGCATAGAGCTTTAAT 12972
|| ||||| ||||| ||
Sbjct 11430 CAACATAGTGCTTTTAT 11446
>seq9966
Length=48347
Score = 109 bits (120), Expect = 7e-20
Identities = 219/322 (68%), Gaps = 2/322 (1%)
Strand=Plus/Plus
Query 12235 ATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGCATGCTAAATTT 12294
|||||| ||||| | || | | ||||||| | | ||||||||||| | |||||||
Sbjct 23298 ATCAAAAAATGCTAATGCAATGGCTTCTGGGCTAAGGTACCACAAATGATTTTTAAATTT 23357
Query 12295 TTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATAAGTTCCTTTAA 12354
| | || ||| |||||| | | |||| | | || ||||| | ||||| || ||
Sbjct 23358 ATGTAGTGTAACTCGAGATATGTCCGGATCTATAGTTTTATAATGTACAAGTTTTTTGAA 23417
Query 12355 AAA-TGATAAATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGTGAACCATGCTTTGA 12413
||| ||| ||||||| ||| || ||||||| || | || | ||||| ||||
Sbjct 23418 AAACTGA-AAATCATGATTAGGTGCTTCAGCAGCAAAAGATGTTCTAAACCAAGCTTGTG 23476
Query 12414 TATACACTGTAGCAATAAAAACACAAATTTCAGAAACGGATTTGATTAATTTCACCGTCA 12473
||| | | || |||||||| || || || || | ||| || ||| | | |
Sbjct 23477 CATAAATTTTAATGATAAAAACGCATATATCGGATATTCCTTTTATCTCTTTTGCGTTTA 23536
Query 12474 TTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGCCATCCACC 12533
||| |||||||| | || | ||||||||||| | ||||| || ||||||||||| |
Sbjct 23537 ATTTAAATTGTTTTTGGAAGAGAAATATTTTTAAACAATATAAAGCCTTTGCCATCCATC 23596
Query 12534 TAGCGTGGTGGAATGCACCCGG 12555
|||| || || | ||| || ||
Sbjct 23597 TAGCATGATGAACTGCTCCTGG 23618
>seq9346
Length=1398
Score = 109 bits (120), Expect = 7e-20
Identities = 219/322 (68%), Gaps = 2/322 (1%)
Strand=Plus/Minus
Query 12235 ATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGCATGCTAAATTT 12294
|||||| ||||| | || | | ||||||| | | ||||||||||| | |||||||
Sbjct 1070 ATCAAAAAATGCTAATGCAATGGCTTCTGGGCTAAGGTACCACAAATGATTTTTAAATTT 1011
Query 12295 TTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATAAGTTCCTTTAA 12354
| | || ||| |||||| | | |||| | | || ||||| | ||||| || ||
Sbjct 1010 ATGTAGTGTAACTCGAGATATGTCCGGATCTATAGTTTTATAATGTACAAGTTTTTTGAA 951
Query 12355 AAA-TGATAAATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGTGAACCATGCTTTGA 12413
||| ||| ||||||| ||| || ||||||| || | || | ||||| ||||
Sbjct 950 AAACTGA-AAATCATGATTAGGTGCTTCAGCAGCAAAAGATGTTCTAAACCAAGCTTGTG 892
Query 12414 TATACACTGTAGCAATAAAAACACAAATTTCAGAAACGGATTTGATTAATTTCACCGTCA 12473
||| | | || |||||||| || || || || | ||| || ||| | | |
Sbjct 891 CATAAATTTTAATGATAAAAACGCATATATCGGATATTCCTTTTATCTCTTTTGCGTTTA 832
Query 12474 TTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGCCATCCACC 12533
||| |||||||| | || | ||||||||||| | ||||| || ||||||||||| |
Sbjct 831 ATTTAAATTGTTTTTGGAAGAGAAATATTTTTAAACAATATAAAGCCTTTGCCATCCATC 772
Query 12534 TAGCGTGGTGGAATGCACCCGG 12555
|||| || || | ||| || ||
Sbjct 771 TAGCATGATGAACTGCTCCTGG 750
>seq15352
Length=91899
Score = 96.9 bits (106), Expect = 4e-16
Identities = 234/353 (66%), Gaps = 6/353 (2%)
Strand=Plus/Minus
Query 12223 TGATATTCTTTCATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATG 12282
||||||| || || || |||| ||| || | ||||||| |||||||||| || ||
Sbjct 66248 TGATATTTCATCGTCGAAAAATGACATTGCACTTGCTTCTGGGCTTAAATACCATAAGTG 66189
Query 12283 CATGCTAAATTTTTTCAATGCCACTTCAGATATTTTAGCATC---TGTCGATTGATAATC 12339
| ||||| | || || |||| || || || |||| |||| || || ||
Sbjct 66188 GTTTTGGAATTTCTGTAACGCAACTTTAGCTAAGCTATCATCAACTGTC---TGGTAGTC 66132
Query 12340 AATAAGTTCCTTTAAAAATGATAAATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGT 12399
| ||||| || | |||| || |||| ||||| |||| | | | |||| ||
Sbjct 66131 ATGAAGTTTTTTAATAAATTTCAAGTCATGGTTTGGTGCTTTAACAGGAACAGGAGCCGT 66072
Query 12400 GAACCATGCTTTGATATACACTGTAGCAATAAAAACACAAATTTCAGAAACGGATTTGAT 12459
||||| ||||| | || || | ||| || ||| |||||| | | |||
Sbjct 66071 AAACCAAGCTTTTACGTAAACAAAAACAAGGAATTGACATATTTCAAATAATCCTTTTTC 66012
Query 12460 TAATTTCACCGTCATTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGC 12519
| ||| || | | ||| || | ||||||| ||||||||| | |||||||||
Sbjct 66011 TTCTTTGCTTGTTAAGTGGAAAGATTCCCTAAATAAATATATTTTTAAGGAATATATGGC 65952
Query 12520 TTTTGCCATCCACCTAGCGTGGTGGAATGCACCCGGTTTTCGAAATTTTACTT 12572
|||||||||||| | || ||||| ||||| || ||||| ||||| || ||||
Sbjct 65951 TTTTGCCATCCAGCGGGCATGGTGAAATGCCCCGGGTTTACGAAACTTGACTT 65899
Score = 87.8 bits (96), Expect = 2e-13
Identities = 267/408 (65%), Gaps = 21/408 (5%)
Strand=Plus/Minus
Query 12772 AAATCTTTTAAATAAAGGTACATCAGGACCTGAGGTTGTAGGTATTTTAAGTTCAAA--- 12828
|||||||||||||| ||| |||| ||| || || ||| | ||| | |||||
Sbjct 65699 AAATCTTTTAAATAGAGGAACATTAGGTCCACTTGTACCAGGCAATTTTTGATCAAACGT 65640
Query 12829 AACACCCCTGAGGATAAGTTCAAATATGTGATGCCTGCAAGGCAAATACAATAGtttttt 12888
|| || | |||| |||||| || || || | |||||| ||||| || || | ||
Sbjct 65639 GGCAGCC---AAAATAATTTCAAAAATATGGTGGCGGCAAGGTAAATATAAGAGATCATT 65583
Query 12889 ttCAAGCAACCGTTCCAGTGAAACTGCAGCTCC---TTTACTTGATCCTAGATTTGCAGC 12945
|| | |||| || | |||||||| || |||| || ||| | |||||
Sbjct 65582 ATCTAACAACTTCTCTAAAATTACTGCAGCACCAGATTTA--TG-TCCCAAGTTTGCGTT 65526
Query 12946 AGTAGTATCACAGCATAGAGCTTTAATAAAGTCTGGAATTCCCCAATCATTAATAGCGTC 13005
|| ||||| || |||| ||||| || | || | |||||| ||||| || |
Sbjct 65525 GGTTGTATCGCAACATAATGCTTTTATTGAATCACATAGACCCCAACTATTAAGCGCATT 65466
Query 13006 AAACATTGCATCAGCTTGCGACTGACCTGTTCCATCATCTAGTACTGGGATCGCTAATAT 13065
| ||||||| |||||||| |||| |||| || |||| | |||| | |||||||
Sbjct 65465 GTAAATTGCATTTGCTTGCGAAATACCTTTTCCGTCTTCTAATGCTGGTACATCTAATAT 65406
Query 13066 TTTTTCAATTTGCCCACAACTCAATACAACTGGTAGTCGTTCTTTATTTTTTCCACTTGA 13125
|| ||| ||||| ||| ||| | | || |||| || || | || | || |||
Sbjct 65405 TTGTTCCATTTGACCATTACTTAGAATAATAGGTAATCTATC---AACTTGTTTACATGA 65349
Query 13126 CGT------TTTTAAAATTTTTCCATCCCAGTGAAGAACACTAGCATT 13167
| | || |||||| ||||||||||||| |||| ||||||
Sbjct 65348 AATAATATCTGGTATAATTTTCCCATCCCAGTGAATGACACCAGCATT 65301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 63294343017991
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |