Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq15079 149 8e-32 seq9966 109 7e-20 seq9346 109 7e-20 seq15352 96.9 4e-16 >seq15079 Length=60444 Score = 149 bits (164), Expect = 8e-32 Identities = 521/797 (65%), Gaps = 41/797 (5%) Strand=Plus/Plus Query 12199 CACCATCTGGTTCTTGATGTTTGATGATATTCTTTCATCAAAGAATGCCATAGCTACAGT 12258 |||||||| || |||| |||||| ||||||||||||| | | |||||||| Sbjct 10668 CACCATCTTACGTTTTATGTCCAATGATACCTTTTCATCAAAGAAAGATAATGCTACAGT 10727 Query 12259 TTCTGGGTTTAAATACCACAAATGCATGCTAAATTTTTTCAATGCCACTTCAGATATTTT 12318 ||| || || | ||||||||| || | |||||||| |||||| || || |||||||| Sbjct 10728 TTCGGGATTCAGATACCACAAGTGATTACTAAATTTCCTCAATGTAACATCTGATATTTT 10787 Query 12319 AGCATCTGTCGATTGATAATCAATAAGTTCCTTTAAAAATGATAAATCATTATTTGGAGC 12378 ||| | | || || ||| |||| || | ||| ||||||| ||| |||| Sbjct 10788 TTTATCGATAGCTTTGTATTCATATAGTTTTTTCAGGAATTGTAAATCAAGATTCGGAG- 10846 Query 12379 TTCAGA---TGCGAGAGGACAAGTGAACCATGCTTTGATATACACTGTAGCAATAAAAAC 12435 |||| ||||| |||| |||||||| |||| | || | | ||||||||| Sbjct 10847 --CAGATATTGCGACAGGAGTGGTGAACCAAGCTTCCACGTATATCATCACAATAAAAAT 10904 Query 12436 ACAAATTTCAGAAACGGATTTGATTAATT-TCACCGTCATTTTGAATTGTTTACGAAATA 12494 |||| |||| || | | || || | | | ||| | ||||| | || |||| Sbjct 10905 ACAAGTTTCTCGAATAGCCACAAATATTTCTGAAC-TCAATGAAAATTGGTCTCGGAATA 10963 Query 12495 AAAATATTTTTATAGTA-TATATGGCTTTTGCCATCCACCTAGCGTGGTGGAATGCACCC 12553 |||| ||||| || | ||||| || || | |||||| | || || ||||| || || Sbjct 10964 GGAATACTTTTA-AGCAGTATATCGCCTTCGACATCCAACGTGCATGATGGAAAGCGCCA 11022 Query 12554 GGTTTTCGAAATTTTACTTAACTGCAGGGA----ACTTTACCAATAAATATCTGAACAAG 12609 || | |||||||| || | || ||| | || | || | |||||| || | Sbjct 11023 GGATAACGAAATTTAAC--ATCTTGAGGTAAACGACGT--CCTAAAAATATGAGAGTCAA 11078 Query 12610 CTCCAAAAGTTCCCGGTAGTCTTCCCTTGGTTG-----ATTTGAATCAAGTTGCTTTTGG 12664 || | | ||| |||||| ||||| ||||| | || ||| | || | ||| Sbjct 11079 ATCTATTAACTCCTTGTAGTCGTCCCTAGGTTGGACGAACTTCAAT-ATGTCTCATTTAC 11137 Query 12665 ATAAAGTGATTAATGTCATCAATATGAT--TTTGT-ATTTTTTCTTGCACATACGAATCT 12721 ||| || | || || ||||| | |||| | || | || ||| | |||| Sbjct 11138 ATACGTTG--TTATCCTTTCGATATGTTCAGTTGTAACATTATTTTTCACCCTCTGATCT 11195 Query 12722 TCAATCCCA-TTAGAA-----TATTGACTTATATCAATTTCGCCCCAGCTCTCTCGAAAT 12775 ||||| ||| || | | ||||| ||| || |||| ||| |||||||| Sbjct 11196 TCAATTCCACTTCGGAACGCCAATTGA-TTAATTCCATTT-----CAGTCATCTCGAAAG 11249 Query 12776 CTTTTAAATAAAGGTACATCAGGACCTGAGGTTGTAGGTATTTTAAGTTCAAAAACACCC 12835 | ||||| | ||||| | ||||| | || | ||||| |||| |||||| |||| Sbjct 11250 TTCTTAAAAATTGGTACGTTGGGACCAGTTGTGGAAGGTAATTTACATTCAAATACACAA 11309 Query 12836 CTGAGGATAAGTTCAAATATGTGATGCCTGCAAGGCAAATACAATAGttttttttCAAGC 12895 | || || | ||| | ||||| |||||||| || || || || | || |||| | Sbjct 11310 CGTAGAATTAATTCGTAGATGTGGTGCCTGCATGGAAAGTATAAAATGTTCCTTTCGAAT 11369 Query 12896 AACCGTTCCAGTGAAACTGCAGCTCCTTTACTTGATCCTAGATTTGCAGCAGTAGTATCA 12955 || || ||||| |||||| ||||| || || |||||||| | |||||| ||||| Sbjct 11370 AAACGCTCCAGAATAACTGCTGCTCCATTCGTTTTACCTAGATTAGAAGCAGTTGTATCG 11429 Query 12956 CAGCATAGAGCTTTAAT 12972 || ||||| ||||| || Sbjct 11430 CAACATAGTGCTTTTAT 11446 >seq9966 Length=48347 Score = 109 bits (120), Expect = 7e-20 Identities = 219/322 (68%), Gaps = 2/322 (1%) Strand=Plus/Plus Query 12235 ATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGCATGCTAAATTT 12294 |||||| ||||| | || | | ||||||| | | ||||||||||| | ||||||| Sbjct 23298 ATCAAAAAATGCTAATGCAATGGCTTCTGGGCTAAGGTACCACAAATGATTTTTAAATTT 23357 Query 12295 TTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATAAGTTCCTTTAA 12354 | | || ||| |||||| | | |||| | | || ||||| | ||||| || || Sbjct 23358 ATGTAGTGTAACTCGAGATATGTCCGGATCTATAGTTTTATAATGTACAAGTTTTTTGAA 23417 Query 12355 AAA-TGATAAATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGTGAACCATGCTTTGA 12413 ||| ||| ||||||| ||| || ||||||| || | || | ||||| |||| Sbjct 23418 AAACTGA-AAATCATGATTAGGTGCTTCAGCAGCAAAAGATGTTCTAAACCAAGCTTGTG 23476 Query 12414 TATACACTGTAGCAATAAAAACACAAATTTCAGAAACGGATTTGATTAATTTCACCGTCA 12473 ||| | | || |||||||| || || || || | ||| || ||| | | | Sbjct 23477 CATAAATTTTAATGATAAAAACGCATATATCGGATATTCCTTTTATCTCTTTTGCGTTTA 23536 Query 12474 TTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGCCATCCACC 12533 ||| |||||||| | || | ||||||||||| | ||||| || ||||||||||| | Sbjct 23537 ATTTAAATTGTTTTTGGAAGAGAAATATTTTTAAACAATATAAAGCCTTTGCCATCCATC 23596 Query 12534 TAGCGTGGTGGAATGCACCCGG 12555 |||| || || | ||| || || Sbjct 23597 TAGCATGATGAACTGCTCCTGG 23618 >seq9346 Length=1398 Score = 109 bits (120), Expect = 7e-20 Identities = 219/322 (68%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 12235 ATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGCATGCTAAATTT 12294 |||||| ||||| | || | | ||||||| | | ||||||||||| | ||||||| Sbjct 1070 ATCAAAAAATGCTAATGCAATGGCTTCTGGGCTAAGGTACCACAAATGATTTTTAAATTT 1011 Query 12295 TTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATAAGTTCCTTTAA 12354 | | || ||| |||||| | | |||| | | || ||||| | ||||| || || Sbjct 1010 ATGTAGTGTAACTCGAGATATGTCCGGATCTATAGTTTTATAATGTACAAGTTTTTTGAA 951 Query 12355 AAA-TGATAAATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGTGAACCATGCTTTGA 12413 ||| ||| ||||||| ||| || ||||||| || | || | ||||| |||| Sbjct 950 AAACTGA-AAATCATGATTAGGTGCTTCAGCAGCAAAAGATGTTCTAAACCAAGCTTGTG 892 Query 12414 TATACACTGTAGCAATAAAAACACAAATTTCAGAAACGGATTTGATTAATTTCACCGTCA 12473 ||| | | || |||||||| || || || || | ||| || ||| | | | Sbjct 891 CATAAATTTTAATGATAAAAACGCATATATCGGATATTCCTTTTATCTCTTTTGCGTTTA 832 Query 12474 TTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGCCATCCACC 12533 ||| |||||||| | || | ||||||||||| | ||||| || ||||||||||| | Sbjct 831 ATTTAAATTGTTTTTGGAAGAGAAATATTTTTAAACAATATAAAGCCTTTGCCATCCATC 772 Query 12534 TAGCGTGGTGGAATGCACCCGG 12555 |||| || || | ||| || || Sbjct 771 TAGCATGATGAACTGCTCCTGG 750 >seq15352 Length=91899 Score = 96.9 bits (106), Expect = 4e-16 Identities = 234/353 (66%), Gaps = 6/353 (2%) Strand=Plus/Minus Query 12223 TGATATTCTTTCATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATG 12282 ||||||| || || || |||| ||| || | ||||||| |||||||||| || || Sbjct 66248 TGATATTTCATCGTCGAAAAATGACATTGCACTTGCTTCTGGGCTTAAATACCATAAGTG 66189 Query 12283 CATGCTAAATTTTTTCAATGCCACTTCAGATATTTTAGCATC---TGTCGATTGATAATC 12339 | ||||| | || || |||| || || || |||| |||| || || || Sbjct 66188 GTTTTGGAATTTCTGTAACGCAACTTTAGCTAAGCTATCATCAACTGTC---TGGTAGTC 66132 Query 12340 AATAAGTTCCTTTAAAAATGATAAATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGT 12399 | ||||| || | |||| || |||| ||||| |||| | | | |||| || Sbjct 66131 ATGAAGTTTTTTAATAAATTTCAAGTCATGGTTTGGTGCTTTAACAGGAACAGGAGCCGT 66072 Query 12400 GAACCATGCTTTGATATACACTGTAGCAATAAAAACACAAATTTCAGAAACGGATTTGAT 12459 ||||| ||||| | || || | ||| || ||| |||||| | | ||| Sbjct 66071 AAACCAAGCTTTTACGTAAACAAAAACAAGGAATTGACATATTTCAAATAATCCTTTTTC 66012 Query 12460 TAATTTCACCGTCATTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGC 12519 | ||| || | | ||| || | ||||||| ||||||||| | ||||||||| Sbjct 66011 TTCTTTGCTTGTTAAGTGGAAAGATTCCCTAAATAAATATATTTTTAAGGAATATATGGC 65952 Query 12520 TTTTGCCATCCACCTAGCGTGGTGGAATGCACCCGGTTTTCGAAATTTTACTT 12572 |||||||||||| | || ||||| ||||| || ||||| ||||| || |||| Sbjct 65951 TTTTGCCATCCAGCGGGCATGGTGAAATGCCCCGGGTTTACGAAACTTGACTT 65899 Score = 87.8 bits (96), Expect = 2e-13 Identities = 267/408 (65%), Gaps = 21/408 (5%) Strand=Plus/Minus Query 12772 AAATCTTTTAAATAAAGGTACATCAGGACCTGAGGTTGTAGGTATTTTAAGTTCAAA--- 12828 |||||||||||||| ||| |||| ||| || || ||| | ||| | ||||| Sbjct 65699 AAATCTTTTAAATAGAGGAACATTAGGTCCACTTGTACCAGGCAATTTTTGATCAAACGT 65640 Query 12829 AACACCCCTGAGGATAAGTTCAAATATGTGATGCCTGCAAGGCAAATACAATAGtttttt 12888 || || | |||| |||||| || || || | |||||| ||||| || || | || Sbjct 65639 GGCAGCC---AAAATAATTTCAAAAATATGGTGGCGGCAAGGTAAATATAAGAGATCATT 65583 Query 12889 ttCAAGCAACCGTTCCAGTGAAACTGCAGCTCC---TTTACTTGATCCTAGATTTGCAGC 12945 || | |||| || | |||||||| || |||| || ||| | ||||| Sbjct 65582 ATCTAACAACTTCTCTAAAATTACTGCAGCACCAGATTTA--TG-TCCCAAGTTTGCGTT 65526 Query 12946 AGTAGTATCACAGCATAGAGCTTTAATAAAGTCTGGAATTCCCCAATCATTAATAGCGTC 13005 || ||||| || |||| ||||| || | || | |||||| ||||| || | Sbjct 65525 GGTTGTATCGCAACATAATGCTTTTATTGAATCACATAGACCCCAACTATTAAGCGCATT 65466 Query 13006 AAACATTGCATCAGCTTGCGACTGACCTGTTCCATCATCTAGTACTGGGATCGCTAATAT 13065 | ||||||| |||||||| |||| |||| || |||| | |||| | ||||||| Sbjct 65465 GTAAATTGCATTTGCTTGCGAAATACCTTTTCCGTCTTCTAATGCTGGTACATCTAATAT 65406 Query 13066 TTTTTCAATTTGCCCACAACTCAATACAACTGGTAGTCGTTCTTTATTTTTTCCACTTGA 13125 || ||| ||||| ||| ||| | | || |||| || || | || | || ||| Sbjct 65405 TTGTTCCATTTGACCATTACTTAGAATAATAGGTAATCTATC---AACTTGTTTACATGA 65349 Query 13126 CGT------TTTTAAAATTTTTCCATCCCAGTGAAGAACACTAGCATT 13167 | | || |||||| ||||||||||||| |||| |||||| Sbjct 65348 AATAATATCTGGTATAATTTTCCCATCCCAGTGAATGACACCAGCATT 65301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63294343017991