Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq10371 120 4e-22 seq9873 104 3e-17 seq9983 86.0 8e-12 >seq10371 Length=124667 Score = 120 bits (132), Expect = 4e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 62244 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62303 |||| ||||||| || ||| | ||| |||| || || || | |||||| ||||| Sbjct 62499 TGAACGGATCCAAAATTTGCGAGTATCTCGTTCTGCATATCTTCGTCCCATAAATTTCTA 62558 Query 62304 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 62363 |||||||| ||| || ||||| ||||| || | |||||||||||||||||| | | Sbjct 62559 GCGGTTAAATCTCGCAGTAGATGTGGATTGACAATGACAAATTCTCCAGACAATACGCGC 62618 Query 62364 CGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCA 62423 | || ||||| || ||||| ||||| | || || ||||| || ||||| || || Sbjct 62619 CTCACATAGATATTGCTTGTATATGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCC 62678 Query 62424 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGT 62472 || || || || ||||||||||| | || | |||||| | ||||| Sbjct 62679 GTCGAGGCCGTTGGCATAGGTGCTATTAAAAGGGAATTTCTTATACCGT 62727 Score = 118 bits (130), Expect = 1e-21 Identities = 188/267 (70%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 || ||||| || || | |||| | |||||||||| || || ||||| || ||||| Sbjct 64616 CTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAA 64675 Query 63651 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63709 || ||| || || || ||| || || || || || ||| || || | |||||| Sbjct 64676 TATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAAT 64734 Query 63710 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63769 || || || || | ||| ||||| |||||||| ||||| || ||||| ||| ||||| Sbjct 64735 ACCAACAGCTACTCTCATCAACATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTT 64794 Query 63770 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63829 || |||||| | | || | ||||||||||||| ||| || || |||||||| || Sbjct 64795 CAGCAAGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGTCTCGATC 64854 Query 63830 GTAAATAATAACCGAGTTGAGTTTATC 63856 ||| || || | |||| ||||| || Sbjct 64855 GTATATTATGGCAGAGTCCAGTTTCTC 64881 Score = 86.0 bits (94), Expect = 8e-12 Identities = 217/326 (67%), Gaps = 8/326 (2%) Strand=Plus/Plus Query 62737 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62796 |||| |||||||| ||||| |||||| ||| | |||| ||||||||| | |||| Sbjct 63138 TACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTCGATAGGATAAAAGTTAA 63197 Query 62797 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62856 || || | ||||| ||||| | || | ||| | || || ||||| || Sbjct 63198 CGTCGATGACTTTATCTAGATTACGAGTAACGATTTTCGCGACTGTTTTAAGTTTATCAA 63257 Query 62857 AATCAAA-----TCGCCCATCTATTA-CAAACATGTTCAAGGCAACAGATGCCAGATTAC 62910 |||| || ||| | ||||| |||||||||| | || | |||||| | ||||| Sbjct 63258 AATCGAAAGTTTTCGTGTCTGTATTAACAAACATGTTGACAGCGATAGATGCTAAATTAC 63317 Query 62911 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 62970 | || || || || || | | | |||| | || || ||||| | || || || | Sbjct 63318 ACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCACAAGTTGCTGCATT 63377 Query 62971 TGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGAATG 63029 ||||||| |||| || || ||||| | |||| | || || ||| |||||||| || Sbjct 63378 TGATAGTGCCTATATGCTGATGATT-CGATTTTCGATTGCAATGATCTTTATAAAGCATA 63436 Query 63030 AATGGAGTACCAGTTTCAATCTGAGA 63055 | || || || ||||| | ||||| Sbjct 63437 TAAGGTGTTCCGGTTTCTACTTGAGA 63462 >seq9873 Length=3435365 Score = 104 bits (114), Expect = 3e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 33798 ATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTC 33857 || ||||||||| ||||||||||| || || | |||||||||||||||||||||||||| Sbjct 2561933 ATTTACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTTCCAGATGTC 2561874 Query 33858 ATAATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894 | |||||| || || || || ||||| | ||||||| Sbjct 2561873 AGGATATTGAATAGGAAACATTACAAAACGATTTGGA 2561837 >seq9983 Length=1335725 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | || ||||| |||||||||||||| |||| || ||||| || |||| | Sbjct 1104062 CACTGAACACCTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGA 1104121 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 | || ||||| |||||||| | | ||| || || |||| ||||||| | |||| Sbjct 1104122 TTGCGTAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1104181 Query 64075 ATTCTACCGTTGTTACTCCA 64094 |||| | ||||| |||||| Sbjct 1104182 ATTCAATTGTTGTCACTCCA 1104201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622827446187640