Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq9764 127 2e-24 seq15293 118 9e-22 >seq9764 Length=1320143 Score = 127 bits (140), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | ||||| ||| | || ||| ||||||| || ||| Sbjct 200330 AATGCAAATCTTTGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200389 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || || ||||| |||||||||||||| ||||| ||||| Sbjct 200390 TGATACAATAGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200449 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || |||||||| || ||||| | |||| || |||||| || Sbjct 200450 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200509 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||||||||||||||| ||| ||||| Sbjct 200510 CATTCAAAAAGAATCCACACTTCAT 200534 Score = 118 bits (130), Expect = 9e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || |||||||| | ||||| ||| | || ||| | ||||| || ||| Sbjct 199874 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 199933 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| ||||| || ||||||||||| ||||| ||||| Sbjct 199934 TGATACAATAGAAAACGTGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCA 199993 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || |||||||| || ||||| | |||| || |||||| || Sbjct 199994 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200053 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||||||||||||||| ||| ||||| Sbjct 200054 CATTCAAAAAGAATCCACACTTCAT 200078 Score = 118 bits (130), Expect = 9e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || |||||||| | ||||| ||| | || ||| | ||||| || ||| Sbjct 200558 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 200617 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| ||||| || ||||||||||| ||||| ||||| Sbjct 200618 TGATACAATAGAAAACGTGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCA 200677 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || |||||||| || ||||| | |||| || |||||| || Sbjct 200678 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200737 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||||||||||||||| ||| ||||| Sbjct 200738 CATTCAAAAAGAATCCACACTTCAT 200762 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || ||||| | ||||| ||| | || ||| |||||||||| || Sbjct 201014 AATGCAAATTTTCGTGAAAACTCTTACTGGTAAAACCATCACCCTCGAAGTCGAAGCTTC 201073 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | || || || ||| |||||||| || || ||||| ||||| Sbjct 201074 AGACACCATTGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATCCCTCCAGATCA 201133 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | | || | || ||||||||||| ||||| | ||||| | ||||| || Sbjct 201134 ACAACGTTTAATCTTCGCTGGCAAGCAACTGGAAGACGGCAGAACTCTTTCTGATTACAA 201193 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||||||||| ||| | || ||||| ||| || | | ||||| Sbjct 201194 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 201241 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | ||||| ||| | || ||| | || || || || Sbjct 199647 ATGCAAATCTTTGTGAAAACTCTTACTGGGAAAACCATCACCTTAGAGGTGGAAGCTTCT 199706 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | |||||| ||||| || ||||||||||| ||||| |||||| Sbjct 199707 GATACTATAGAGAATGTCAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCAA 199766 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | || || ||||| | ||||| | |||| || |||||| ||| Sbjct 199767 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCCGATTACAAC 199826 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 |||||||||||||| ||| ||||| Sbjct 199827 ATTCAAAAAGAATCCACACTTCAT 199850 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| | ||||| ||| | || ||| ||||||| || ||| Sbjct 200786 AATGCAGATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200845 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || ||||| |||||||||||||| ||||| ||||| Sbjct 200846 TGACACAATAGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200905 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || |||||||| | ||||| | || | || || || || Sbjct 200906 ACAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCAGACTACAA 200965 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| ||||||||||| |||| || || ||| | | |||||||| Sbjct 200966 TATTCAGAAAGAATCTACTCTTCACTTGGTTTTACGTCTTCGAGGAGGA 201014 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| | ||||| ||| | || ||| ||||||| || ||| Sbjct 200102 AATGCAGATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200161 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || ||||| |||||||||||||| ||||| ||||| Sbjct 200162 TGACACAATAGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200221 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || |||||||| | ||||| | || | || || || || Sbjct 200222 ACAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCAGACTACAA 200281 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| ||||||||||| |||| || || Sbjct 200282 TATTCAGAAAGAATCTACTCTTCACTTGGT 200311 >seq15293 Length=768699 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | || |||||| | || || | ||||| ||||| Sbjct 127297 AATGCAAATCTTTGTCAAAACCCTGACGGGAAAAACTATCACGTTGGAAGTTGAGGCATC 127238 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || ||||| | |||||| || ||| ||||| |||||||| || || ||||| Sbjct 127237 AGATACGATCGAAAACGTCAAAGCCAAAATTCAGGACAAGGAAGGCATCCCACCTGATCA 127178 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || ||| |||||||| ||||| | | | | || |||||||| Sbjct 127177 GCAGCGTTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCCGTACTCTCTCTGATTATAA 127118 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||||||||| || | ||||| || Sbjct 127117 CATTCAAAAAGAATCGACCTTACATTTGGT 127088 Score = 113 bits (124), Expect = 4e-20 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| ||| | || || | || ||||| || Sbjct 125928 ATGCAGATTTTCGTCAAGACTCTCACTGGTAAAACTATCACATTGGAGGTCGAAGCGTCT 125869 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || ||| || ||| || ||||||||||| |||||||||||| Sbjct 125868 GACACGATCGAGAACGTGAAAGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAA 125809 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGA-AACGTCAGCGATTATA 24168 || |||||||||| || ||||| || || || ||| ||| || ||| ||| || | Sbjct 125808 CAAAGACTGATTTTCGCGGGCAAACAGCTGGAGGATGGACGGACTTTGTC--CGACTACA 125751 Query 24169 ACATTCAAAAAGAATCTACAATTCA 24193 | |||||||||||||||||| |||| Sbjct 125750 ATATTCAAAAAGAATCTACACTTCA 125726 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||| | || || ||| | || || | |||||||| || Sbjct 126156 ATGCAAATTTTTGTCAAAACACTCACCGGCAAAACAATCACTCTGGAAGTCGAAGCATCG 126097 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| || ||| ||||||||||| || ||||| ||||| Sbjct 126096 GACACGATTGAAAACGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCAGATCAG 126037 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | | ||| || || || ||||| | | | | | ||||||||| Sbjct 126036 CAGAGATTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACGCTTTCTGATTATAAC 125977 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 ||||| || |||||||| | ||||| || || ||| Sbjct 125976 ATTCAGAAGGAATCTACCCTGCATTTGGTTTTGAGA 125941 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || || ||| | || || | ||||| ||||| | Sbjct 126384 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126325 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| || ||| ||||||||||| || ||||| ||||| Sbjct 126324 GACACGATTGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 126265 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| | |||| || ||| || || || ||||| | | | | | || || ||| Sbjct 126264 CAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAAC 126205 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || ||||||||| | ||||| || Sbjct 126204 ATCCAGAAGGAATCTACATTGCATTTGGT 126176 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || || || | || || | ||||||||||| Sbjct 127524 ATGCAGATTTTCGTGAAGACGTTGACCGGGAAGACCATAACTCTGGAAGTCGAGGCTTCT 127465 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || ||| |||||| || || |||||||| || || ||||| Sbjct 127464 GATACCATTGAGAACGTAAAAGCAAAGATCCAAGATAAGGAAGGCATCCCACCTGATCAG 127405 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||| |||||||| ||||| | | | || ||||||||| Sbjct 127404 CAGCGTTTGATCTTCGCCGGAAAGCAACTTGAAGACGGTCGTACTCTCTCTGATTATAAC 127345 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||||| || | ||||| || Sbjct 127344 ATTCAAAAAGAATCAACCTTACATTTGGT 127316 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || || ||| | || || | ||||| ||||| | Sbjct 126612 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126553 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| || ||| ||||||||||| || ||||| ||||| Sbjct 126552 GACACGATTGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 126493 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| | |||| || ||| || || || ||||| | | | | | || || ||| Sbjct 126492 CAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAAC 126433 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || ||||| ||| | ||||| || Sbjct 126432 ATCCAGAAGGAATCGACATTGCATTTGGT 126404 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || || ||| | || || | ||||| ||||| | Sbjct 126840 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126781 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| || ||| ||||||||||| || ||||| ||||| Sbjct 126780 GACACGATTGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 126721 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| | |||| || ||| || || || ||||| | | | | | || || ||| Sbjct 126720 CAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAAC 126661 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || ||||| ||| | ||||| || Sbjct 126660 ATCCAGAAGGAATCGACATTGCATTTGGT 126632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429855416423745