Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq15293 105 6e-18 seq9764 87.8 2e-12 >seq15293 Length=768699 Score = 105 bits (116), Expect = 6e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CGGAGTCCAG 115344 |||||||||||||||||||| ||||| || ||||| || || | ||| || || || Sbjct 126156 ATGCAAATTTTTGTCAAAACACTCACCGGCAAAACAATCACTCTGGAAGTCGAAG--CAT 126099 Query 115345 CG-ACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || |||| ||| | | || ||| |||||| || |||||||| |||| |||| Sbjct 126098 CGGACACGATTGAAAACGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCAGATC 126039 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| ||| | || | ||| || ||||| | ||||| | | || | | ||||||| Sbjct 126038 AGCAGAGATTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACGCTTTCTGATTATA 125979 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||| || || ||||| | ||| |||| |||||| | || || || Sbjct 125978 ACATTCAGAAGGAATCTACCCTGCATTTGGTTTTGAGACTTCGCGGTGG 125930 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||||||||||||||| || ||||| || || | ||| ||| | | Sbjct 126384 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126325 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || ||| |||||| || |||||||| |||| |||||| Sbjct 126324 GACACGATTGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 126265 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||| | |||| || || ||||| | ||||| | | || | | || || ||| Sbjct 126264 CAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAAC 126205 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 || || || || ||||| | ||| |||| Sbjct 126204 ATCCAGAAGGAATCTACATTGCATTTGGT 126176 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||||||||| || ||||||||||| || || | ||| ||| | Sbjct 127297 AATGCAAATCTTTGTCAAAACCCTGACGGGAAAAACTATCACGTTGGAAGTTGAGGCATC 127238 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | | | || ||| |||||| || || |||||| |||| |||||| Sbjct 127237 AGATACGATCGAAAACGTCAAAGCCAAAATTCAGGACAAGGAAGGCATCCCACCTGATCA 127178 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | | || | || || || ||| | ||||| | | || | | |||||||| Sbjct 127177 GCAGCGTTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCCGTACTCTCTCTGATTATAA 127118 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||||||||| || || ||||| |||| Sbjct 127117 CATTCAAAAAGAATCGACCTTACATTTGGT 127088 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||||||||||||||| || ||||| || || | ||| ||| | | Sbjct 126612 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126553 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || ||| |||||| || |||||||| |||| |||||| Sbjct 126552 GACACGATTGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 126493 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||| | |||| || || ||||| | ||||| | | || | | || || ||| Sbjct 126492 CAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAAC 126433 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 || || || || || || | ||| |||| Sbjct 126432 ATCCAGAAGGAATCGACATTGCATTTGGT 126404 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||||||||||||||| || ||||| || || | ||| ||| | | Sbjct 126840 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126781 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || ||| |||||| || |||||||| |||| |||||| Sbjct 126780 GACACGATTGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 126721 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||| | |||| || || ||||| | ||||| | | || | | || || ||| Sbjct 126720 CAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAAC 126661 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 || || || || || || | ||| |||| Sbjct 126660 ATCCAGAAGGAATCGACATTGCATTTGGT 126632 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| ||||| || ||||| || ||||| || || | || || | Sbjct 125928 ATGCAGATTTTCGTCAAGACTCTCACTGGTAAAACTATCACATTGGAGGTCGAAGCGTCT 125869 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | || || || ||| |||||| |||||||||||| | || ||||| Sbjct 125868 GACAC-GATCGAGAACGTGAAAGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCA 125810 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||||| |||| ||||||||||| | || |||| || || |||| || || Sbjct 125809 ACAAAGACTGATTTTCGCGGGCAAACAGCTGGAGGATGGACGGACTTTGTCCGACTACAA 125750 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||||||||||| ||||| Sbjct 125749 TATTCAAAAAGAATCTAC 125732 >seq9764 Length=1320143 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 115277 AGATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACG 115336 ||||| | |||||||| ||||| ||||| || || || |||||||| ||| | || | Sbjct 199638 AGATTCATCATGCAAATCTTTGTGAAAACTCTTACTGGGAAAACCATCACCTTAGAGGTG 199697 Query 115337 GAGTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCC 115396 || | || ||| | | | || ||| || || |||||||||||| | || Sbjct 199698 GAAGCTTCTGATACTATAGAGAATGTCAAAGCCAAGATCCAAGATAAAGAAGGCATTCCT 199757 Query 115397 GTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCC 115456 |||||| ||| | | || | || || || || || ||||| | | ||| | || Sbjct 199758 CCTGATCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCC 199817 Query 115457 GATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| |||||||||||||| || || | ||| |||| || | | |||||||||| Sbjct 199818 GATTACAACATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGAA 199875 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || || || ||||| ||||| || |||||||| ||| | ||| || || Sbjct 199874 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 199933 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | | | || ||| || || |||||||||||| | || |||||| Sbjct 199934 TGATACAATAGAAAACGTGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCA 199993 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | | || | || ||||| || | ||||| | | ||| | ||||||| || Sbjct 199994 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200053 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||||||||| || || | ||| |||| || | | |||||||||| Sbjct 200054 CATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGAA 200103 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || || || ||||| ||||| || |||||||| ||| | ||| || || Sbjct 200558 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 200617 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | | | || ||| || || |||||||||||| | || |||||| Sbjct 200618 TGATACAATAGAAAACGTGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCA 200677 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | | || | || ||||| || | ||||| | | ||| | ||||||| || Sbjct 200678 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200737 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||||||||| || || | ||| |||| || | | |||||||||| Sbjct 200738 CATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGAA 200787 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA-ACGGAG-TCC 115342 |||||||||||| || ||||| || || || |||||||| ||| ||||| || || | | Sbjct 201014 AATGCAAATTTTCGTGAAAACTCTTACTGGTAAAACCATCACCCTCGAAGTCGAAGCTTC 201073 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||||| ||| | | ||||| |||||| || ||||| || |||| ||| Sbjct 201074 A--GACACCATTGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATCCCTCCAGAT 201131 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || ||| | | || | || ||||| ||| | ||||| | || ||| | | ||||| Sbjct 201132 CAACAACGTTTAATCTTCGCTGGCAAGCAACTGGAAGACGGCAGAACTCTTTCTGATTAC 201191 Query 115463 AACATTCAAAAAGAGTCTAC 115482 ||||| |||||||| || || Sbjct 201192 AACATCCAAAAAGAATCCAC 201211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425264277109480