Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq9764 95.1 1e-14 seq15293 87.8 1e-12 >seq9764 Length=1320143 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||| |||| ||| || ||||| || ||||| |||||||| |||| Sbjct 200557 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200498 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| |||| || ||||| || | || | || ||||| || ||| Sbjct 200497 AGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 200438 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || |||||| | | | || || || || Sbjct 200437 ATGCCTTCTTTGTCTTGGATCTTGGC--CTTCACATTTTCTATTGTATCAGAGGCTTCAA 200380 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| | |||||||||||| || || || ||||| ||||| || |||||| Sbjct 200379 CTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCATT 200330 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||| |||| ||| || ||||| || ||||| |||||||| |||| Sbjct 200101 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200042 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| |||| || ||||| || | || | || ||||| || ||| Sbjct 200041 AGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 199982 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| ||||| || || || ||| ||||| | | | || || || || Sbjct 199981 ATGCCTTCTTTATCTTGGATCTTGGCT--TTCACGTTTTCTATTGTATCAGAGGCTTCAA 199924 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| | |||||||||||| || || || ||||| || || ||||||||| Sbjct 199923 CTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 199874 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||| |||| ||| || ||||| || ||||| |||||||| |||| Sbjct 200785 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200726 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| |||| || ||||| || | || | || ||||| || ||| Sbjct 200725 AGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 200666 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| ||||| || || || ||| ||||| | | | || || || || Sbjct 200665 ATGCCTTCTTTATCTTGGATCTTGGCT--TTCACGTTTTCTATTGTATCAGAGGCTTCAA 200608 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| | |||||||||||| || || || ||||| || || ||||||||| Sbjct 200607 CTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 200558 >seq15293 Length=768699 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || || ||||| || ||||||||||| | | || | |||| Sbjct 126173 AGAACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCT 126232 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || || |||| | | ||| || || ||| | || |||||||| Sbjct 126233 TCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCT 126292 Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 ||||| ||| ||||| | | | |||||| | ||| ||||| ||||| | Sbjct 126293 TGAATTTTAGCT--TTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTG 126350 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| ||||||||||||||||| ||||| Sbjct 126351 TTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || || ||||| || ||||||||||| | | || | |||| Sbjct 126401 AGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCT 126460 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || || |||| | | ||| || || ||| | || |||||||| Sbjct 126461 TCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCT 126520 Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 ||||| ||| ||||| | | | |||||| | ||| ||||| ||||| | Sbjct 126521 TGAATTTTAGCT--TTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTG 126578 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| ||||||||||||||||| ||||| Sbjct 126579 TTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || || ||||| || ||||||||||| | | || | |||| Sbjct 126629 AGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCT 126688 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || || |||| | | ||| || || ||| | || |||||||| Sbjct 126689 TCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCT 126748 Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 ||||| ||| ||||| | | | |||||| | ||| ||||| ||||| | Sbjct 126749 TGAATTTTAGCT--TTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTG 126806 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| ||||||||||||||||| ||||| Sbjct 126807 TTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405012073723210