Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq9873 219 3e-52 seq10689 131 1e-25 seq10555 131 1e-25 seq15313 125 5e-24 seq15278 125 5e-24 seq9788 125 5e-24 seq10177 111 1e-19 seq15293 107 1e-18 seq9764 95.1 8e-15 >seq9873 Length=3435365 Score = 219 bits (242), Expect = 3e-52 Identities = 288/399 (72%), Gaps = 0/399 (0%) Strand=Plus/Plus Query 6152 ATCGACCACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTA 6211 ||||| || ||||||| | | ||||| ||||| ||||| || || || || || || Sbjct 2553991 ATCGATCATCATGGGGAGCTTAAACGTCAATCGCAATGTCAGCGATGCTTTTTATCGTTA 2554050 Query 6212 CAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCAT 6271 || |||||||| ||| || || || || || |||||||| |||||||| || || || Sbjct 2554051 TAAGATGCCGCGGATCCAGGCGAAAGTGGAAGGCAAGGGAAATGGTATTAAGACAGTGAT 2554110 Query 6272 TGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATA 6331 ||||| ||| || || || || ||| |||| || ||||| || || ||||| || || Sbjct 2554111 CGTCAATATGGTGGATGTGGCGAAAGCGATCGGTCGTCCTGCTACATATCCGACCAAGTA 2554170 Query 6332 TTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGT 6391 |||||| ||||| | ||||||||||| |||||||| ||| ||||| |||||||| || Sbjct 2554171 TTTCGGTTGCGAGTTGGGCGCTCAGACACAGTTTGACTTCAAGAACGAACGCTTCATTGT 2554230 Query 6392 TAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTT 6451 ||||| ||||| | | | ||||| || || | || || || || || || || | Sbjct 2554231 CAACGGCTCGCACGATGCGACAAAGCTACAAGATCTGCTGGATGGTTTCATCCGAAAATA 2554290 Query 6452 TGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAA 6511 ||| || || | || |||||||||||||| ||||| | || || | | |||| Sbjct 2554291 TGTTCTTTGCCCGGCCTGCGATAACCCGGAAACCGAATTAATGGTCAGTTCGAAGAAGGG 2554350 Query 6512 CACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGG 6550 ||| || || ||||| |||||||| || || | ||||| Sbjct 2554351 CACGATTTCACAGGGTTGCAAAGCATGTGGACATCATGG 2554389 >seq10689 Length=41669 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||| ||||||||||| || |||||||| Sbjct 24791 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGAAAGTAGATAGGGACAGTGGGAATCTCGT 24850 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 24851 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 24885 >seq10555 Length=15048 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||| ||||||||||| || |||||||| Sbjct 7290 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGAAAGTAGATAGGGACAGTGGGAATCTCGT 7349 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 7350 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7384 >seq15313 Length=84324 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77317 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 77376 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 77377 GGTCGTATTTAGCCTTA 77393 >seq15278 Length=77882 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37301 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 37360 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 37361 GGTCGTATTTAGCCTTA 37377 >seq9788 Length=50654 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13564 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 13505 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 13504 GGTCGTATTTAGCCTTA 13488 >seq10177 Length=3058365 Score = 111 bits (122), Expect = 1e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 38130 TTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATT 38189 ||||||||||||||||| |||| | |||| | || || | ||||| || || || || Sbjct 2346115 TTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGATG 2346174 Query 38190 AGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGG 38249 || || |||||||| | || | ||||| |||||| || || ||| ||||||| | Sbjct 2346175 AGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 2346234 Query 38250 ACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAAT 38309 | ||||| | || || || | || || ||||||||||| | |||||||||||| Sbjct 2346235 ATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAAA 2346294 Query 38310 ATCTGCATG 38318 ||||||||| Sbjct 2346295 ATCTGCATG 2346303 >seq15293 Length=768699 Score = 107 bits (118), Expect = 1e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| | || | || | ||||| || || |||||||||||||| | Sbjct 125697 CATTTCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGT 125756 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | |||||| ||| | || || | ||||| || || || || || | ||||||||||| Sbjct 125757 CGGACAAAGTCCGTCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTGTTGATCGG 125816 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||||||| || |||||| ||||| |||| || || || || Sbjct 125817 GAGGAATGCCTTCTTTATCTTGAATTTTCGCTTTCACGTTCTCGATCGTGTCAGACGCTT 125876 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || ||||| ||||||||||| || | || || ||||| |||||||| Sbjct 125877 CGACCTCCAATGTGATAGTTTTACCAGTGAGAGTCTTGACGAAAATCTGCAT 125928 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||||| | |||||||| | || ||||| || || ||||| |||| Sbjct 126840 TACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAG 126899 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || |||| || | ||||||||||| || |||| | || ||||| | | Sbjct 126900 AAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAG 126959 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| ||||||| || ||||| | || |||||| |||| Sbjct 126960 GGATTCCTTCCTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAA 127019 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || |||||||| ||||||| |||||| || || || ||||| Sbjct 127020 CTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCAT 127068 >seq9764 Length=1320143 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 || || || || || || ||| || ||||| || ||||||||||| | | | || Sbjct 201229 CGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCG 201170 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | ||| || || || || |||| ||||||||||| | |||| || |||||| Sbjct 201169 TCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGATTCCCTCTTTG 201110 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| |||||| ||| || || | | || ||| | ||| ||||| | || || Sbjct 201109 TCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGGGTGATG 201050 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| || | ||||||||||| || ||||| Sbjct 201049 GTTTTACCAGTAAGAGTTTTCACGAAAATTTGCAT 201015 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||| | ||||| |||| |||||| ||| || |||||||| ||||||| Sbjct 199877 CATT-CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAAT 199819 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | |||| || || || || || || || || | ||||||||||| | Sbjct 199818 CGGAGAGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAG 199759 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||||||| || || || || ||||||| | |||||| | || Sbjct 199758 GAGGAATGCCTTCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTT 199699 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || ||||| || || ||||| || || | |||||||| || || |||||| Sbjct 199698 CCACCTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCATG 199646 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||| | ||||| |||| |||||| ||| || |||||||| ||||||| Sbjct 200561 CATT-CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAAT 200503 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | |||| || | || || || || || || | ||||||||||| | Sbjct 200502 CGGAGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAG 200443 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||||||||| || || ||||||||| | | ||||| || Sbjct 200442 GAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTT 200383 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | || || ||||| || || | |||||||| || || ||||| Sbjct 200382 CAACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCAT 200331 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||| | ||||| ||||| |||||||| || || ||||||||||| | Sbjct 200333 CATT-CCTCCTCGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGT 200275 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | |||| || || || || || || || || | ||||||||||| | Sbjct 200274 CTGAGAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAG 200215 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||||||||| || || ||| || || | | || || || Sbjct 200214 GAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTT 200155 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | || || ||||| || || | ||||||||||| |||||||| Sbjct 200154 CAACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200103 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||| | ||| || ||||| |||||||| || || ||||||||||| | Sbjct 201017 CATT-CCTCCTCGAAGACGTAAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGT 200959 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | |||| || || || || || || || || | ||||||||||| | Sbjct 200958 CTGAGAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAG 200899 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||||||||| || || ||| || || | | || || || Sbjct 200898 GAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTT 200839 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | || || ||||| || || | ||||||||||| |||||||| Sbjct 200838 CAACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334884420322949