Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq9873 219 3e-52
seq10689 131 1e-25
seq10555 131 1e-25
seq15313 125 5e-24
seq15278 125 5e-24
seq9788 125 5e-24
seq10177 111 1e-19
seq15293 107 1e-18
seq9764 95.1 8e-15
>seq9873
Length=3435365
Score = 219 bits (242), Expect = 3e-52
Identities = 288/399 (72%), Gaps = 0/399 (0%)
Strand=Plus/Plus
Query 6152 ATCGACCACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTA 6211
||||| || ||||||| | | ||||| ||||| ||||| || || || || || ||
Sbjct 2553991 ATCGATCATCATGGGGAGCTTAAACGTCAATCGCAATGTCAGCGATGCTTTTTATCGTTA 2554050
Query 6212 CAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCAT 6271
|| |||||||| ||| || || || || || |||||||| |||||||| || || ||
Sbjct 2554051 TAAGATGCCGCGGATCCAGGCGAAAGTGGAAGGCAAGGGAAATGGTATTAAGACAGTGAT 2554110
Query 6272 TGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATA 6331
||||| ||| || || || || ||| |||| || ||||| || || ||||| || ||
Sbjct 2554111 CGTCAATATGGTGGATGTGGCGAAAGCGATCGGTCGTCCTGCTACATATCCGACCAAGTA 2554170
Query 6332 TTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGT 6391
|||||| ||||| | ||||||||||| |||||||| ||| ||||| |||||||| ||
Sbjct 2554171 TTTCGGTTGCGAGTTGGGCGCTCAGACACAGTTTGACTTCAAGAACGAACGCTTCATTGT 2554230
Query 6392 TAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTT 6451
||||| ||||| | | | ||||| || || | || || || || || || || |
Sbjct 2554231 CAACGGCTCGCACGATGCGACAAAGCTACAAGATCTGCTGGATGGTTTCATCCGAAAATA 2554290
Query 6452 TGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAA 6511
||| || || | || |||||||||||||| ||||| | || || | | ||||
Sbjct 2554291 TGTTCTTTGCCCGGCCTGCGATAACCCGGAAACCGAATTAATGGTCAGTTCGAAGAAGGG 2554350
Query 6512 CACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGG 6550
||| || || ||||| |||||||| || || | |||||
Sbjct 2554351 CACGATTTCACAGGGTTGCAAAGCATGTGGACATCATGG 2554389
>seq10689
Length=41669
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct 24791 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGAAAGTAGATAGGGACAGTGGGAATCTCGT 24850
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 24851 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 24885
>seq10555
Length=15048
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct 7290 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGAAAGTAGATAGGGACAGTGGGAATCTCGT 7349
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 7350 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7384
>seq15313
Length=84324
Score = 125 bits (138), Expect = 5e-24
Identities = 74/77 (96%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77317 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 77376
Query 20007 GGTAATATTTAGCCTTA 20023
||| ||||||||||||
Sbjct 77377 GGTCGTATTTAGCCTTA 77393
>seq15278
Length=77882
Score = 125 bits (138), Expect = 5e-24
Identities = 74/77 (96%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37301 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 37360
Query 20007 GGTAATATTTAGCCTTA 20023
||| ||||||||||||
Sbjct 37361 GGTCGTATTTAGCCTTA 37377
>seq9788
Length=50654
Score = 125 bits (138), Expect = 5e-24
Identities = 74/77 (96%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13564 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 13505
Query 20007 GGTAATATTTAGCCTTA 20023
||| ||||||||||||
Sbjct 13504 GGTCGTATTTAGCCTTA 13488
>seq10177
Length=3058365
Score = 111 bits (122), Expect = 1e-19
Identities = 138/189 (73%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 38130 TTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATT 38189
||||||||||||||||| |||| | |||| | || || | ||||| || || || ||
Sbjct 2346115 TTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGATG 2346174
Query 38190 AGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGG 38249
|| || |||||||| | || | ||||| |||||| || || ||| ||||||| |
Sbjct 2346175 AGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 2346234
Query 38250 ACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAAT 38309
| ||||| | || || || | || || ||||||||||| | ||||||||||||
Sbjct 2346235 ATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAAA 2346294
Query 38310 ATCTGCATG 38318
|||||||||
Sbjct 2346295 ATCTGCATG 2346303
>seq15293
Length=768699
Score = 107 bits (118), Expect = 1e-18
Identities = 163/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| || ||||| | || | || | ||||| || || |||||||||||||| |
Sbjct 125697 CATTTCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGT 125756
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
| |||||| ||| | || || | ||||| || || || || || | |||||||||||
Sbjct 125757 CGGACAAAGTCCGTCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTGTTGATCGG 125816
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|| | ||||||||| || |||||| ||||| |||| || || || ||
Sbjct 125817 GAGGAATGCCTTCTTTATCTTGAATTTTCGCTTTCACGTTCTCGATCGTGTCAGACGCTT 125876
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || || ||||| ||||||||||| || | || || ||||| ||||||||
Sbjct 125877 CGACCTCCAATGTGATAGTTTTACCAGTGAGAGTCTTGACGAAAATCTGCAT 125928
Score = 107 bits (118), Expect = 1e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | ||||| | |||||||| | || ||||| || || ||||| ||||
Sbjct 126840 TACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAG 126899
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | || |||| || | ||||||||||| || |||| | || ||||| | |
Sbjct 126900 AAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAG 126959
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||| ||||| ||||||| || ||||| | || |||||| ||||
Sbjct 126960 GGATTCCTTCCTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAA 127019
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| || || |||||||| ||||||| |||||| || || || |||||
Sbjct 127020 CTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCAT 127068
>seq9764
Length=1320143
Score = 95.1 bits (104), Expect = 8e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
|| || || || || || ||| || ||||| || ||||||||||| | | | ||
Sbjct 201229 CGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCG 201170
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | ||| || || || || |||| ||||||||||| | |||| || ||||||
Sbjct 201169 TCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGATTCCCTCTTTG 201110
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| |||||| ||| || || | | || ||| | ||| ||||| | || ||
Sbjct 201109 TCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGGGTGATG 201050
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||||||| || | ||||||||||| || |||||
Sbjct 201049 GTTTTACCAGTAAGAGTTTTCACGAAAATTTGCAT 201015
Score = 93.3 bits (102), Expect = 3e-14
Identities = 161/233 (69%), Gaps = 1/233 (0%)
Strand=Plus/Minus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| || |||| | ||||| |||| |||||| ||| || |||||||| |||||||
Sbjct 199877 CATT-CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAAT 199819
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
| || | | |||| || || || || || || || || | ||||||||||| |
Sbjct 199818 CGGAGAGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAG 199759
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|| | ||||||||| || || || || ||||||| | |||||| | ||
Sbjct 199758 GAGGAATGCCTTCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTT 199699
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
| || ||||| || || ||||| || || | |||||||| || || ||||||
Sbjct 199698 CCACCTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCATG 199646
Score = 86.0 bits (94), Expect = 4e-12
Identities = 159/232 (69%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| || |||| | ||||| |||| |||||| ||| || |||||||| |||||||
Sbjct 200561 CATT-CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAAT 200503
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
| || | | |||| || | || || || || || || | ||||||||||| |
Sbjct 200502 CGGAGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAG 200443
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|| | |||||||||||| || || ||||||||| | | ||||| ||
Sbjct 200442 GAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTT 200383
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||||| | || || ||||| || || | |||||||| || || |||||
Sbjct 200382 CAACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCAT 200331
Score = 82.4 bits (90), Expect = 5e-11
Identities = 158/232 (68%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| || |||| | ||||| ||||| |||||||| || || ||||||||||| |
Sbjct 200333 CATT-CCTCCTCGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGT 200275
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
| || | | |||| || || || || || || || || | ||||||||||| |
Sbjct 200274 CTGAGAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAG 200215
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|| | |||||||||||| || || ||| || || | | || || ||
Sbjct 200214 GAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTT 200155
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||||| | || || ||||| || || | ||||||||||| ||||||||
Sbjct 200154 CAACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200103
Score = 82.4 bits (90), Expect = 5e-11
Identities = 158/232 (68%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| || |||| | ||| || ||||| |||||||| || || ||||||||||| |
Sbjct 201017 CATT-CCTCCTCGAAGACGTAAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGT 200959
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
| || | | |||| || || || || || || || || | ||||||||||| |
Sbjct 200958 CTGAGAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAG 200899
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|| | |||||||||||| || || ||| || || | | || || ||
Sbjct 200898 GAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTT 200839
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||||| | || || ||||| || || | ||||||||||| ||||||||
Sbjct 200838 CAACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334884420322949
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