Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq10371 123 3e-23
seq9873 109 7e-19
seq9983 82.4 1e-10
>seq10371
Length=124667
Score = 123 bits (136), Expect = 3e-23
Identities = 257/374 (69%), Gaps = 18/374 (5%)
Strand=Plus/Plus
Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505
|| ||||| || || | |||| | |||||||||| || || ||||| || |||||
Sbjct 64616 CTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAA 64675
Query 63506 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63564
|| ||| || || || ||| || || || || || ||| || || | ||||||
Sbjct 64676 TATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAAT 64734
Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624
|| || || || | ||| ||||| |||||||| ||||| || ||||| ||| |||||
Sbjct 64735 ACCAACAGCTACTCTCATCAACATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTT 64794
Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63684
|| |||||| | | || | ||||||||||||| ||| || || |||||||| ||
Sbjct 64795 CAGCAAGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGTCTCGATC 64854
Query 63685 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 63744
||| || || | |||| ||||| || || || |||| | || || |||| |
Sbjct 64855 GTATATTATGGCAGAGTCCAGTTTCTCTGCATTATTCTTAATAATAT-TATAATAAT-GT 64912
Query 63745 TGA--AATAATAGGAAAATGTTTCCCATTT---TTAGGA---TTGACATAGTTGAATAAA 63796
| | ||| ||||||| ||||| ||||| ||||| |||||||| | |||||
Sbjct 64913 TCACTAATTATAGGAATATGTT---CATTTGTGATAGGATTCTTGACATAAT---ATAAA 64966
Query 63797 TCCTCCATCACTTC 63810
|| | ||| || ||
Sbjct 64967 TCATGCATGACCTC 64980
Score = 120 bits (132), Expect = 4e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 62099 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62158
|||| ||||||| || ||| | ||| |||| || || || | |||||| |||||
Sbjct 62499 TGAACGGATCCAAAATTTGCGAGTATCTCGTTCTGCATATCTTCGTCCCATAAATTTCTA 62558
Query 62159 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 62218
|||||||| ||| || ||||| ||||| || | |||||||||||||||||| | |
Sbjct 62559 GCGGTTAAATCTCGCAGTAGATGTGGATTGACAATGACAAATTCTCCAGACAATACGCGC 62618
Query 62219 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 62278
| || ||||| || ||||| ||||| | || || ||||| || ||||| || ||
Sbjct 62619 CTCACATAGATATTGCTTGTATATGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCC 62678
Query 62279 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGT 62327
|| || || || ||||||||||| | || | |||||| | |||||
Sbjct 62679 GTCGAGGCCGTTGGCATAGGTGCTATTAAAAGGGAATTTCTTATACCGT 62727
Score = 82.4 bits (90), Expect = 1e-10
Identities = 216/326 (66%), Gaps = 8/326 (2%)
Strand=Plus/Plus
Query 62592 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62651
|||| |||||||| ||||| |||||| ||| | |||| ||||||||| | ||||
Sbjct 63138 TACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTCGATAGGATAAAAGTTAA 63197
Query 62652 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62711
|| || | ||||| ||||| | || | ||| | || || ||||| ||
Sbjct 63198 CGTCGATGACTTTATCTAGATTACGAGTAACGATTTTCGCGACTGTTTTAAGTTTATCAA 63257
Query 62712 AATCAAA-----TCGCCCATCTATTA-CAAACATGTTCAATGCAACAGATGCCAGATTAC 62765
|||| || ||| | ||||| |||||||||| | || | |||||| | |||||
Sbjct 63258 AATCGAAAGTTTTCGTGTCTGTATTAACAAACATGTTGACAGCGATAGATGCTAAATTAC 63317
Query 62766 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 62825
| || || || || || | | | |||| | || || ||||| | || || || |
Sbjct 63318 ACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCACAAGTTGCTGCATT 63377
Query 62826 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGAATG 62884
|||| || |||| || || ||||| | |||| | || || ||| |||||||| ||
Sbjct 63378 TGATAGTGCCTATATGCTGATGATT-CGATTTTCGATTGCAATGATCTTTATAAAGCATA 63436
Query 62885 AATGGAGTACCAGTTTCAATCTGAGA 62910
| || || || ||||| | |||||
Sbjct 63437 TAAGGTGTTCCGGTTTCTACTTGAGA 63462
>seq9873
Length=3435365
Score = 109 bits (120), Expect = 7e-19
Identities = 80/93 (86%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218
|||||||| ||||||||||| || || | |||||||||||||| |||||||||||| ||
Sbjct 2561929 ACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTTCCAGATGTCAGGA 2561870
Query 33219 TATTGAATTGGAAAAATAACAAATCTATTTGGA 33251
|||||||| ||||| || ||||| | |||||||
Sbjct 2561869 TATTGAATAGGAAACATTACAAAACGATTTGGA 2561837
>seq9983
Length=1335725
Score = 82.4 bits (90), Expect = 1e-10
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869
|||| || | || ||||| || ||||||||||| |||| || |||||||| |||| |
Sbjct 1104062 CACTGAACACCTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGA 1104121
Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929
| || ||||| |||||||| | | ||| || || |||| ||||||| | ||||
Sbjct 1104122 TTGCGTAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1104181
Query 63930 ATTCTACCGTTGTTACACCA 63949
|||| | ||||| || |||
Sbjct 1104182 ATTCAATTGTTGTCACTCCA 1104201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633510192168400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |