Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq10371 123 3e-23 seq9873 109 7e-19 seq9983 82.4 1e-10 >seq10371 Length=124667 Score = 123 bits (136), Expect = 3e-23 Identities = 257/374 (69%), Gaps = 18/374 (5%) Strand=Plus/Plus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 || ||||| || || | |||| | |||||||||| || || ||||| || ||||| Sbjct 64616 CTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAA 64675 Query 63506 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63564 || ||| || || || ||| || || || || || ||| || || | |||||| Sbjct 64676 TATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAAT 64734 Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624 || || || || | ||| ||||| |||||||| ||||| || ||||| ||| ||||| Sbjct 64735 ACCAACAGCTACTCTCATCAACATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTT 64794 Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63684 || |||||| | | || | ||||||||||||| ||| || || |||||||| || Sbjct 64795 CAGCAAGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGTCTCGATC 64854 Query 63685 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 63744 ||| || || | |||| ||||| || || || |||| | || || |||| | Sbjct 64855 GTATATTATGGCAGAGTCCAGTTTCTCTGCATTATTCTTAATAATAT-TATAATAAT-GT 64912 Query 63745 TGA--AATAATAGGAAAATGTTTCCCATTT---TTAGGA---TTGACATAGTTGAATAAA 63796 | | ||| ||||||| ||||| ||||| ||||| |||||||| | ||||| Sbjct 64913 TCACTAATTATAGGAATATGTT---CATTTGTGATAGGATTCTTGACATAAT---ATAAA 64966 Query 63797 TCCTCCATCACTTC 63810 || | ||| || || Sbjct 64967 TCATGCATGACCTC 64980 Score = 120 bits (132), Expect = 4e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 62099 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62158 |||| ||||||| || ||| | ||| |||| || || || | |||||| ||||| Sbjct 62499 TGAACGGATCCAAAATTTGCGAGTATCTCGTTCTGCATATCTTCGTCCCATAAATTTCTA 62558 Query 62159 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 62218 |||||||| ||| || ||||| ||||| || | |||||||||||||||||| | | Sbjct 62559 GCGGTTAAATCTCGCAGTAGATGTGGATTGACAATGACAAATTCTCCAGACAATACGCGC 62618 Query 62219 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 62278 | || ||||| || ||||| ||||| | || || ||||| || ||||| || || Sbjct 62619 CTCACATAGATATTGCTTGTATATGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCC 62678 Query 62279 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGT 62327 || || || || ||||||||||| | || | |||||| | ||||| Sbjct 62679 GTCGAGGCCGTTGGCATAGGTGCTATTAAAAGGGAATTTCTTATACCGT 62727 Score = 82.4 bits (90), Expect = 1e-10 Identities = 216/326 (66%), Gaps = 8/326 (2%) Strand=Plus/Plus Query 62592 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62651 |||| |||||||| ||||| |||||| ||| | |||| ||||||||| | |||| Sbjct 63138 TACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTCGATAGGATAAAAGTTAA 63197 Query 62652 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62711 || || | ||||| ||||| | || | ||| | || || ||||| || Sbjct 63198 CGTCGATGACTTTATCTAGATTACGAGTAACGATTTTCGCGACTGTTTTAAGTTTATCAA 63257 Query 62712 AATCAAA-----TCGCCCATCTATTA-CAAACATGTTCAATGCAACAGATGCCAGATTAC 62765 |||| || ||| | ||||| |||||||||| | || | |||||| | ||||| Sbjct 63258 AATCGAAAGTTTTCGTGTCTGTATTAACAAACATGTTGACAGCGATAGATGCTAAATTAC 63317 Query 62766 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 62825 | || || || || || | | | |||| | || || ||||| | || || || | Sbjct 63318 ACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCACAAGTTGCTGCATT 63377 Query 62826 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGAATG 62884 |||| || |||| || || ||||| | |||| | || || ||| |||||||| || Sbjct 63378 TGATAGTGCCTATATGCTGATGATT-CGATTTTCGATTGCAATGATCTTTATAAAGCATA 63436 Query 62885 AATGGAGTACCAGTTTCAATCTGAGA 62910 | || || || ||||| | ||||| Sbjct 63437 TAAGGTGTTCCGGTTTCTACTTGAGA 63462 >seq9873 Length=3435365 Score = 109 bits (120), Expect = 7e-19 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 |||||||| ||||||||||| || || | |||||||||||||| |||||||||||| || Sbjct 2561929 ACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTTCCAGATGTCAGGA 2561870 Query 33219 TATTGAATTGGAAAAATAACAAATCTATTTGGA 33251 |||||||| ||||| || ||||| | ||||||| Sbjct 2561869 TATTGAATAGGAAACATTACAAAACGATTTGGA 2561837 >seq9983 Length=1335725 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | || ||||| || ||||||||||| |||| || |||||||| |||| | Sbjct 1104062 CACTGAACACCTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGA 1104121 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | || ||||| |||||||| | | ||| || || |||| ||||||| | |||| Sbjct 1104122 TTGCGTAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1104181 Query 63930 ATTCTACCGTTGTTACACCA 63949 |||| | ||||| || ||| Sbjct 1104182 ATTCAATTGTTGTCACTCCA 1104201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633510192168400