Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq15293 141 8e-29 seq9764 131 1e-25 seq10177 114 1e-20 >seq15293 Length=768699 Score = 141 bits (156), Expect = 8e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || |||||| | |||||| | || || || ||||| Sbjct 125928 ATGCAGATTTTCGTCAAGACTCTCACTGGTAAAACTATCACATTGGAGGTCGAAGCGTCT 125869 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| |||| || |||| ||| || |||||||| ||||| || || || Sbjct 125868 GACACGATCGAGAACGTGAAAGCGAAAATTCAA-GATAAAGAAGGCATTCCTCCCGATCA 125810 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | ||||| || |||||||| | || |||| || ||| || ||| ||||| Sbjct 125809 ACAAAGACTGATTTTCGCGGGCAAACAGCTGGAGGATGGACGGACTTTGTCCGACTACAA 125750 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 ||||||||||||||| || || || | || || | || ||||| |||||| Sbjct 125749 TATTCAAAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGGAAAT 125698 Score = 123 bits (136), Expect = 2e-23 Identities = 169/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || || |||| || ||| | ||||| | ||||| ||| | || Sbjct 127297 AATGCAAATCTTTGTCAAAACCCTGACGGGAAAAACTATCACGTTGGAAGTTGAGGCATC 127238 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || ||||| |||| |||| |||| ||| ||||| ||||| || ||||||| Sbjct 127237 AGATACGATCGAAAACGTCA---AAGCCAAAATTCAG-GACAAGGAAGGCATCCCACCTG 127182 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||||| | || || ||||| || ||| | ||||| | || ||| | |||| Sbjct 127181 ATCAGCAGCGTTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCCGTACTCTCTCTGATT 127122 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || |||||||||||||| || ||||||| || || | ||| | || |||| Sbjct 127121 ATAACATTCAAAAAGAATCGACCTTACATTTGGTTCTTCGTCTACGTGGTGGAA 127068 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||| |||||||| || |||| || | ||||| ||| | Sbjct 127527 ACCATGCAGATTTTCGTGAAGACGTTGACCGGGAAGACCATAACTCTGGAAGTCGAGGCT 127468 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || ||| | || ||| ||| || || ||||| || |||||||| Sbjct 127467 TCTGATACCATTGAGAACGTAAAAGCAAAGATCCAAGATAAGGAAGGCATCCCACCTGAT 127408 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || ||||| || ||| | ||||| | ||| ||| | ||||| Sbjct 127407 CAGCAGCGTTTGATCTTCGCCGGAAAGCAACTTGAAGACGGTCGTACTCTCTCTGATTAT 127348 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || |||||||||||||| || ||||||| || || | ||| | || |||| Sbjct 127347 AACATTCAAAAAGAATCAACCTTACATTTGGTTCTTCGTCTACGTGGTGGAA 127296 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | ||||| ||| | ||||| | ||||| || | || Sbjct 126156 ATGCAAATTTTTGTCAAAACACTCACCGGCAAAACAATCACTCTGGAAGTCGAAGCATCG 126097 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || |||| || |||| ||| ||||||||||| || || || || || Sbjct 126096 GACACGATTGAAAACGTGAAAGCTAAAATTCAG-GACAAAGAAGGAATCCCTCCAGATCA 126038 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || |||||||| ||||| | ||||| | ||||| | ||||| || Sbjct 126037 GCAGAGATTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACGCTTTCTGATTATAA 125978 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||| || ||||| || || ||||| || Sbjct 125977 CATTCAGAAGGAATCTACCCTGCATTTGGT 125948 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | ||||| ||| | ||||| | ||||| ||| | || Sbjct 126384 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126325 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || |||| || |||| ||| ||||||||||| || || || || || Sbjct 126324 GACACGATTGAAAACGTGAAAGCTAAAATTCAA-GACAAAGAAGGAATCCCTCCAGATCA 126266 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | ||||| ||||| ||||| | ||||| | ||||| | || ||||| Sbjct 126265 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126206 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || | ||||| || || Sbjct 126205 CATCCAGAAGGAATCTACATTGCATTTGGTTCT 126173 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | ||||| ||| | ||||| | ||||| ||| | || Sbjct 126612 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126553 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || |||| || |||| ||| ||||||||||| || || || || || Sbjct 126552 GACACGATTGAAAACGTGAAAGCTAAAATTCAA-GACAAAGAAGGAATCCCTCCAGATCA 126494 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | ||||| ||||| ||||| | ||||| | ||||| | || ||||| Sbjct 126493 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126434 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || | ||||| || || Sbjct 126433 CATCCAGAAGGAATCGACATTGCATTTGGTTCT 126401 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | ||||| ||| | ||||| | ||||| ||| | || Sbjct 126840 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126781 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || |||| || |||| ||| ||||||||||| || || || || || Sbjct 126780 GACACGATTGAAAACGTGAAAGCTAAAATTCAA-GACAAAGAAGGAATCCCTCCAGATCA 126722 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | ||||| ||||| ||||| | ||||| | ||||| | || ||||| Sbjct 126721 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126662 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || | ||||| || || Sbjct 126661 CATCCAGAAGGAATCGACATTGCATTTGGTTCT 126629 >seq9764 Length=1320143 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || || ||| ||||||| ||||||| || | || Sbjct 200330 AATGCAAATCTTTGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200389 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || || ||||| || ||| ||||||||||| ||||| ||||| || Sbjct 200390 TGATACAATAGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200449 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || ||||| || | ||||| | | | || | ||||||||| Sbjct 200450 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200509 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||||||||||| || ||| | || || | || ||||||||| Sbjct 200510 CATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGAA 200559 Score = 122 bits (134), Expect = 8e-23 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || || ||| ||||||| | || ||||| | ||| Sbjct 199647 ATGCAAATCTTTGTGAAAACTCTTACTGGGAAAACCATCACCTTAGAGGTGGAAGCTTCT 199706 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| ||| | || |||| || | || || |||||||| ||||| ||||| Sbjct 199707 GATACTATAGAG--AATGTCAAAGCCAAGATCCAA-GATAAAGAAGGCATTCCTCCTGAT 199763 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | || || || || || || || ||||| | | | || | ||||||| Sbjct 199764 CAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCCGATTAC 199823 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||||||||||||||| || ||| | || || | || ||||||||| Sbjct 199824 AACATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGAA 199875 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || ||||| ||| | || || ||| ||||||| | ||||| || | || Sbjct 199874 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 199933 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || || |||| || ||| || |||||||| ||||| ||||| || Sbjct 199934 TGATACAATAGAAAACGTGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCA 199993 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || ||||| || | ||||| | | | || | ||||||||| Sbjct 199994 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200053 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||||||||||| || ||| | || || | || ||||||||| Sbjct 200054 CATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGAA 200103 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || ||| | || || ||| ||||||| ||||||| || | || Sbjct 200102 AATGCAGATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200161 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || || | ||| || ||| ||||||||||| ||||| ||||| || Sbjct 200162 TGACACAATAGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200221 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || ||||| || || ||||| | | | || | || ||||| Sbjct 200222 ACAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCAGACTACAA 200281 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||| |||||||| || || || || || || | || ||||||||| Sbjct 200282 TATTCAGAAAGAATCTACTCTTCACTTGGTTCTGCGTCTTCGAGGAGGAA 200331 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || ||||| ||| | || || ||| ||||||| | ||||| || | || Sbjct 200558 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 200617 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || || |||| || ||| || |||||||| ||||| ||||| || Sbjct 200618 TGATACAATAGAAAACGTGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCA 200677 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || ||||| || | ||||| | | | || | ||||||||| Sbjct 200678 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200737 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||||||||||| || ||| | || || | || ||||||||| Sbjct 200738 CATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGAA 200787 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || ||| | || || ||| ||||||| ||||||| || | || Sbjct 200786 AATGCAGATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200845 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || || | ||| || ||| ||||||||||| ||||| ||||| || Sbjct 200846 TGACACAATAGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200905 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || ||||| || || ||||| | | | || | || ||||| Sbjct 200906 ACAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCAGACTACAA 200965 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||| |||||||| || || || || || || | || ||||||||| Sbjct 200966 TATTCAGAAAGAATCTACTCTTCACTTGGTTTTACGTCTTCGAGGAGGAA 201015 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||| | || |||||| ||||||| ||||||| || | || Sbjct 201014 AATGCAAATTTTCGTGAAAACTCTTACTGGTAAAACCATCACCCTCGAAGTCGAAGCTTC 201073 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | ||| | |||| ||| |||||||| || || || || || | Sbjct 201074 AGACACCATTGAAAACGTAAAGGCCAAAATTCAG-GACAAAGAGGGAATCCCTCCAGATC 201132 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || || ||||| ||| | ||||| | | ||| | ||||||| Sbjct 201133 AACAACGTTTAATCTTCGCTGGCAAGCAACTGGAAGACGGCAGAACTCTTTCTGATTACA 201192 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || |||||||||||||| || || ||||| || | || | ||||| Sbjct 201193 ACATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 201241 >seq10177 Length=3058365 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || || || | || |||||| ||||||| |||| || ||| | Sbjct 2346305 ACCATGCAGATTTTCGTGAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCT 2346246 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || |||||| | ||| || ||| ||||| ||||| |||||||| || Sbjct 2346245 TCCGATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGAT 2346186 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || || || |||||||| | || |||| || ||| || ||||||| Sbjct 2346185 CAACAGCGACTCATCTTCGCTGGCAAACAGCTGGAGGATGGACGTACTCTGTCCGATTAC 2346126 Query 25176 AATATTCAAAAAG 25188 ||||||||||||| Sbjct 2346125 AATATTCAAAAAG 2346113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433246780655885