Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq9873 132 5e-26 seq9795 120 3e-22 seq14942 116 4e-21 >seq9873 Length=3435365 Score = 132 bits (146), Expect = 5e-26 Identities = 157/212 (74%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || || || | || ||||||||| |||||||||| || || ||||||||||| Sbjct 2562330 ATATACGTTTCAATGAGCAAAGAATACATCTCAGAATGGATGTTTTCTATTGCAATTTGA 2562271 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || || ||||| | ||||| || || | || |||||| |||||||| | ||| Sbjct 2562270 AAGCCATAAAAACAACGTGCTTCGGTAATTTTTACCTCTTGACTGAATCTCTCAATCAGA 2562211 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || ||||| || |||||||||||||| ||||| || || || | ||| ||||| | | Sbjct 2562210 TTCTCATTAACAATACCATCGGATGCGGCAAAGAATGCTAAGACATGAGAAATAAAGTAT 2562151 Query 93542 TTCTCATCATCTTTAAGCTT---ATCCCAATC 93570 ||||| ||| | ||||| ||||||||| Sbjct 2562150 TTCTCGTCAGAACTTAGCTTTTCATCCCAATC 2562119 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||| ||||| || || | ||||||||||| || | |||||| | | ||||||||| | Sbjct 2563139 CTTCATCTCGCGAGATAAGTTCATTGCTGAAGGTGAGACCTGGCATAATTCCTCGTTTTT 2563080 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | ||||||||||| | ||||||||||| || || |||||||| || || ||||| | Sbjct 2563079 TCAGCCAAAATATAGCTGCAAAACTACCGCTGAAGAAAATACCTTCGACAGCCGCAAACG 2563020 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 | || | |||||| | ||| | || | | ||||||| ||||| ||||||| | Sbjct 2563019 CGACTACACGTTCAGGAAATGTAGCACTCTCATGATTGATCCAGTTTAATGCCCAATTAG 2562960 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||||||| | |||||| ||||| || | || ||||||| | ||| || Sbjct 2562959 CTTTTTTTCCCACACAAGGAAGTGTCTCAAGCGCATTAAATAAGAAATTTC 2562909 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 93586 AAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||||| |||||||| || |||||||| || ||| | || ||||| ||||| | ||| || Sbjct 2561936 AAGATTTACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTTCCAGAT 2561877 Query 93646 GTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 ||| |||||||||| ||||| || ||||||||||| || |||| || | ||||| Sbjct 2561876 GTCAGGATATTGAATAGGAAACATTACAAAACGATTTGGACCTTCTTGGAGAAGTGGCTC 2561817 Query 93706 TAGTTGTGG 93714 |||| ||| Sbjct 2561816 CAGTTCTGG 2561808 >seq9795 Length=604303 Score = 120 bits (132), Expect = 3e-22 Identities = 81/88 (92%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct 252799 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGTCTGGGAGCGTGG 252740 Query 126327 GTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||||||||||| |||||| || Sbjct 252739 GTTCGAACCCCACACCTGGCAAATTTTT 252712 >seq14942 Length=1168870 Score = 116 bits (128), Expect = 4e-21 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||| Sbjct 367149 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGATCTGGTTCCCATCTGGGAGCGTGG 367090 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||| | |||||| || || Sbjct 367089 GTTCGAACCCCACACTTAGCAAATTTTTTTT 367059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556753750471960