Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq9994 78.8 2e-11 >seq9994 Length=6265506 Score = 78.8 bits (86), Expect = 2e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || |||||||||||| | || || | || | || | ||| || || ||| | Sbjct 5857598 TGCACATTCCACAAATACGGTGCGTCTGGTACGGTGCAGAAATTCGACGGGCTTTGCGTG 5857657 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTG 3486 || ||| || | |||||||||||||||||| | ||||||||||| |||||| | | Sbjct 5857658 CTGCCGCTCAATATTGTCAACGAGAAGATCTACGTGTTCCTCTGGTTTTGGTTCATCATC 5857717 Query 3487 CTAGCCATCATCAGCGGT 3504 || | ||| | |||||| Sbjct 5857718 CTGTCGATCCTGAGCGGT 5857735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12477900766500