Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq10275 86.0 6e-12 >seq10275 Length=574352 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 20240 CCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACT 20299 |||||||||||||| | ||| ||||| || | |||||| || |||||||| || || Sbjct 359507 CCAGTAACATGAGCGATCATGTAAGTCAACAAGGAATACGATGCTATGTTAAATGGCACA 359566 Query 20300 CCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACA 20359 || |||||||||||| | || ||||| ||||| ||| | || |||| | ||| Sbjct 359567 CCTAAACCCATGTCTGCACTTCTTTGATAAAGCTGTGTGGACAATTCTCCGTTATTTACG 359626 Query 20360 TAAAATTGACATAACAAG--TGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGT 20417 |||||||| |||| ||| || || ||||| | ||||| || | || | || | Sbjct 359627 TAAAATTG-TATAA-AAGCATGGCATGGCGGCAATGCCATTTTCGGAATATCAACTGGAT 359684 Query 20418 TCCACGCACACATAATGATTCTTCTATC 20445 |||| || |||| || || | ||| || Sbjct 359685 TCCAGGCTGACATTATAATACGTCTGTC 359712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441287951596360