Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq9788 98.7 8e-16 seq9764 93.3 3e-14 >seq9788 Length=50654 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/100 (84%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 9960 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 9901 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 9900 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 9861 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/100 (84%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 9960 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 9901 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 9900 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 9861 >seq9764 Length=1320143 Score = 93.3 bits (102), Expect = 3e-14 Identities = 167/241 (69%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||| || ||||| ||||||||||| ||| || || |||||||||||||| | Sbjct 199873 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 199814 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | || |||| ||||| ||||| || || || |||| || || ||||| || Sbjct 199813 AGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 199754 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC---ACACTATCAGTAGATTCG 34077 | || ||||| | | | | || |||| || | || | | |||||| || ||| Sbjct 199753 ATGCCTTCTTTAT-CTTGGATCTTGGCTT--TGACATTCTCTATAGTATCAGAAGCTTCC 199697 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAATATG 34137 || | || || ||||| || || || |||||||||||||||||||| | ||| || Sbjct 199696 ACCTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCATGATGAATCTG 199637 Query 34138 T 34138 | Sbjct 199636 T 199636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396987977973958