Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq14069 2262 0.0 seq6931 196 1e-45 >seq14069 Length=58536 Score = 2262 bits (2508), Expect = 0.0 Identities = 1938/2435 (80%), Gaps = 27/2435 (1%) Strand=Plus/Plus Query 40808 TCAGCCGAAGAGGACGGCGAGGGTGGTCGCGCCGCCTCCGACGAGGATGAGTGAGACGAT 40867 |||||||||||| | ||||||| |||||||||||| ||||||| || ||| | || ||| Sbjct 177 TCAGCCGAAGAGCAGGGCGAGGCCGGTCGCGCCGCCGCCGACGACGAGGAGGGCGATGAT 236 Query 40868 CGTCACCCAGGCGACGATGCGGACCCGGCGATTGNNNNNNNNNNNNNNNNNNNNNNNNNC 40927 || | ||||||||||| |||| ||||| ||| | Sbjct 237 GGTGATCCAGGCGACGAGGCGGTTGCGGCGGTTGCGGCGGTTGCGGCGTTCGTTGAGGTC 296 Query 40928 ---------CTCGCTGAGACCGTCGCTCATGCGGGCACCTGCTCGGTCACCGTCGGCCCG 40978 ||||||||| ||||| ||||| || ||||| || || || |||| || Sbjct 297 GCCGTAGTCCTCGCTGAGCTCGTCGTTCATGAGGCGACCTGTTCTGTGACGATCGGGCCT 356 Query 40979 A-----ACAG---GGCCG----------GCAGCGTGGCACGCGAGGTCTCGCGCAGCTCG 41020 || | ||||| |||||||||| | ||| ||| || ||||| Sbjct 357 TCTGTGACGGTCGGGCCGAAGTACTTCGGCAGCGTGGCCTGGGAGCGCTCTCGGAGCTCT 416 Query 41021 GCGGCGGAGACGGTGAAGACGTCCTGCACCTCGAGCGTCGGCTCGCTGTCGGTCACGCCG 41080 |||||||||| ||||| || ||||||||||||||| ||||||| |||||||||| ||| Sbjct 417 GCGGCGGAGATCGTGAACACATCCTGCACCTCGAGCTGCGGCTCGGTGTCGGTCACACCG 476 Query 41081 ATCCGCAGCACCGGATAGCCGCGCCCCTCGCAGAGGCCGCGGAACTTCACGTCGTCCTCG 41140 || ||||||||||| || ||||| |||||||| || ||||||||||||||||| |||||| Sbjct 477 ATGCGCAGCACCGGGTACCCGCGGCCCTCGCACAGCCCGCGGAACTTCACGTCCTCCTCG 536 Query 41141 CGGGGGACGGTGACGATCACGCGCCCTGTCGACTCCGAGAAGAGGGCGGTCGCGGCGTCC 41200 || || || |||||||| ||||| || | |||||| ||||||||||||| ||||| ||| Sbjct 537 CGCGGAACCGTGACGATGACGCGACCAGCCGACTCGGAGAAGAGGGCGGCAGCGGCATCC 596 Query 41201 ACGCCGTCGCGCTCCATGAGCTCGGTGAGCCACACGCGCGCGCCGACGCCGAAGCGCATC 41260 || ||||| || || | || |||| | | ||| ||||||||||||||||||| |||||| Sbjct 597 ACTCCGTCACGTTCGAGGATCTCGTTCAACCAGACGCGCGCGCCGACGCCGATGCGCATG 656 Query 41261 ACGCCCTCGGCGAGGGCCTGCGCGAGGCNNNNNNNNNNNNNNNNNNNNNNACTGGAGACC 41320 || ||||||||||| ||||||||||| | ||||| | Sbjct 657 ACACCCTCGGCGAGCGCCTGCGCGAGACCGCCCTCGGAGAGATCGTGCGCTGAGGAGATC 716 Query 41321 AGCCACTCGTCGCGTGCGGCGGCGATGAGACCGGCCAGGCGTTTCTCGGCGGCGAGGTCG 41380 |||||||||||||| |||||| ||| |||||| || ||||| |||||||| | |||||| Sbjct 717 AGCCACTCGTCGCGCGCGGCGCCGAGGAGACCCGCAAGGCGCTTCTCGGCATCCAGGTCG 776 Query 41381 ACGGNNNNNNNNNNNNNNNNGAGGTGGTCGTGCACGGTGTCGGCCCAGGCGGAGCCGGAA 41440 || ||||||| | || | | ||||||||| || || ||||| Sbjct 777 ACAACGGGCGGTTTGCCGCCGAGGTGGCCATGGATGACGTCGGCCCATGCCGACCCGGAG 836 Query 41441 AGCTCCGTGGACGTCACGCCGAGCAGATAGATGTTCTGGCCCTCGTCCTGCCATCCCGAG 41500 ||||| | |||| |||||||||| ||||||||||| |||||||||||||| || || Sbjct 837 AGCTCTTCGCGCGTCGCGCCGAGCAGGTAGATGTTCTGCCCCTCGTCCTGCCAGCCGGAA 896 Query 41501 GGTATGCGGCGCGAGACGTCGTCGATGAGGCCGAGCACGCCCACGAGAGGAGTGGGGTGG 41560 || ||||||||||| ||||||||||||| |||||||||||||| || || || |||||| Sbjct 897 GGGATGCGGCGCGACACGTCGTCGATGATTCCGAGCACGCCCACCAGCGGGGTCGGGTGG 956 Query 41561 ATCGGCACGTCGCCGGTCTGGTTGTAGAACGAGACGTTCCCGCCCGTGACCGGGGTGCCC 41620 ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 957 ATCGGCACGTCACCGGTCTGGTTGTAGAACGAGACGTTGCCGCCGGTGACCGGGGTGCCC 1016 Query 41621 AGGGCGTAGCAGCCGTCGGCGAGCCCGTCCACCGTCTGACCGAACTGCCACATGACCTCG 41680 || ||| |||| ||||||||||| ||||| |||||||| ||||||||||||||||||||| Sbjct 1017 AGCGCGAAGCATCCGTCGGCGAGGCCGTCGACCGTCTGCCCGAACTGCCACATGACCTCG 1076 Query 41681 GGATTCTCCGGGGAGCCGAAGTTCAGGCAGTCGGTGACCGCAGTGGGCACGGCGCCGGTG 41740 || |||||||| || |||||||||||||||||||||| ||| || ||| ||||||||| Sbjct 1077 GGGTTCTCCGGCGAACCGAAGTTCAGGCAGTCGGTGATCGCCGTCGGCGTCGCGCCGGTG 1136 Query 41741 ACCGCGACGTTGCGGTAGGCCTCGGCGAGGGCGAGCTGTGCGCCCGCGTACGGGTCGAGC 41800 || || ||||||||||| |||||||||||||| | |||||| ||||| || ||||||||| Sbjct 1137 ACGGCCACGTTGCGGTACGCCTCGGCGAGGGCCAACTGTGCACCCGCATAGGGGTCGAGC 1196 Query 41801 TGGCAGTAGCGGCCGTTCGCGTCGGTCGCGATCGCGAACCCGAGGCCCGACTCCTCATCG 41860 |||| |||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct 1197 TGGCTGTAGCGACCGTTCGCGTCGGTGGCGATCGCGAAGCCGAGGCCCGACTCCTCGTCG 1256 Query 41861 ACGCGGATCATGCCGGCGTCGTCGGGGAAGCTGAGGGCCGTGTTGCCGAGCACGTAGTAG 41920 ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| Sbjct 1257 ACGCGGATCATGCCGGCATCGTCGGGGAAGGCGAGGGCGGTGTTGCCGAGCACGTAGTAG 1316 Query 41921 TCGTACTGGTTCGTGATCCACGACGTGTCGGCGAGGTTGGGGGAGCTCACGAGCGCGAGG 41980 |||||||||||||||||||| || ||||| | ||| || || | ||||| |||| Sbjct 1317 TCGTACTGGTTCGTGATCCAGCGGGTATCGGCCAAGTTCGGCGAAGCGATGAGCGTGAGG 1376 Query 41981 AACTGCTCACGCAGGACCGCGGGGTCGTTCGAGCGGGAGAGGAGCTCGGCACTGTCGGCC 42040 |||||||| ||||| || ||||||||| || |||| |||| ||| ||| || ||| Sbjct 1377 AACTGCTCGCGCAGCACGGCGGGGTCGCCGGATCGGGGGAGGTTCTCCGCAGCATCCGCC 1436 Query 42041 TGCAGGGCGTCGAGCCAGGTCGGGTAGGCGACGGGGCGCTCGTAGACCGGGCCGTCGACG 42100 || |||||||||| ||| |||||||| ||||| ||||| |||||||| ||||||||||| Sbjct 1437 TGGAGGGCGTCGATCCATGTCGGGTACGCGACCGGGCGGTCGTAGACGGGGCCGTCGACC 1496 Query 42101 GCGACCGTGGACGGGTCCACGTCGACGATCCGCTCTCCCTGCCAGTCGATGACGAGACGG 42160 |||||||| |||||||| |||||||||| ||||| |||||||||||||||||||| ||| Sbjct 1497 GCGACCGTCGACGGGTCGACGTCGACGACGCGCTCGCCCTGCCAGTCGATGACGAGGCGG 1556 Query 42161 CCGTCGCCGGTGACCTCGCCGAGCACGGAGGTCTCCACCTCCCACTTGCCGGTGACGGCG 42220 ||||||||||||||||||||||||||| |||||| || |||||||| | ||| || Sbjct 1557 CCGTCGCCGGTGACCTCGCCGAGCACGCTGGTCTCGACATCCCACTTCGCAACGACCTCG 1616 Query 42221 AGGAACGCGTCGAGCTTCGCAGGCGAGACGATGGCCATCATCCGCTCCTGCGACTCCGAC 42280 ||||| || | | ||| | || | |||||| |||||||| |||||||||||||| ||| Sbjct 1617 AGGAAGGCCGCCAACTTGGACGGGGCGACGATCGCCATCATGCGCTCCTGCGACTCTGAC 1676 Query 42281 ATGAGGATCTCCTCGGCCGTGAGCGAGGGGTCGCGGAGGAGCACGTTGTCGAGCGAGACG 42340 |||||||||||||| ||||| || ||| ||||| || | |||||||||||||||||| Sbjct 1677 ATGAGGATCTCCTCAGCCGTCAGATGGGGATCGCGCAGCAAGACGTTGTCGAGCGAGACG 1736 Query 42341 TGCATTCCGCTGTTGCCGTTGGCGGCGAGCTCGCTCGTGGCGCAGGAGATGCCTGCAGCC 42400 ||||| ||||||| ||||||||||||||||||||| || |||||||||||||| || || Sbjct 1737 TGCATGCCGCTGTCGCCGTTGGCGGCGAGCTCGCTGGTCGCGCAGGAGATGCCGGCGGCG 1796 Query 42401 CCGAGGTCCTGGATCGCCTCGACCAGCTCGTCGCGGTACAGCTCCAGGCAGCACTCGATG 42460 ||||||||||||||||||||||| ||||| | ||| |||||||| ||||| |||||| Sbjct 1797 CCGAGGTCCTGGATCGCCTCGACGAGCTCATTCTTGTAGAGCTCCAGACAGCATTCGATG 1856 Query 42461 AGCACCTTCTCGGCGAAGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 42520 |||||||||||||||||||||| Sbjct 1857 AGCACCTTCTCGGCGAAGGGGTCGCCGACCTGCACGGCTGGGCGCTTGGTCGGGCCGGTC 1916 Query 42521 NNNNNNNNNNNNNNNGAGGCGAGGATCGACGCGCCGCCGATCCCGTCACCCCCCGTGCGC 42580 || || ||||| ||||||||||| ||||| || || || || Sbjct 1917 TCGTCGAAGGAATCGGATGCCAGGATGCTGGCGCCGCCGATGCCGTCGCCGCCGGTTCGG 1976 Query 42581 GCCGCGAAGAGGACGACCTTGTTGCCTAGGCCCGTCGCGTTGGCGAGCTTGAGGTCCTCG 42640 || |||| || |||||||||||||| | ||| || ||||| |||||||| |||||||| Sbjct 1977 GCACCGAACAGCACGACCTTGTTGCCGACGCCGGTGGCGTTCGCGAGCTTCAGGTCCTCA 2036 Query 42641 TGCCGGAGCACGCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCG 42700 || ||||| ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||| Sbjct 2037 TGGCGGAGGACGCCGACCGCGAGGGCGTTGACGAGCGGGTTGGCCTGGTAGACGGCATCG 2096 Query 42701 AACACGGTCTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCG 42760 || || |||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 2097 AAGACCGTCTCGCCGCCGATGTTCGGAAGGCCGAGGCAGTTGCCGTAGAAGCTGATGCCG 2156 Query 42761 CTGGTGACGCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGG 42820 ||||| || ||||||||||| || || || ||||||| |||| |||||||||||| || Sbjct 2157 CTGGTTACACCGTGCACGACGCGGGCGGTATCGGGGTGGTCGATCGCGCCGAAGCGGAGC 2216 Query 42821 GCGTCCATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCC 42880 || |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 2217 GCATCCATGACGGCGACCGGGCGGGCGCCCATCGAGATGATGTCGCGGACGATGCCGCCG 2276 Query 42881 ACACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCC 42940 || || ||||| ||||||||||| ||||||||| ||||||| |||||||| ||||| ||| Sbjct 2277 ACGCCGGTCGCGGCGCCCTGGAACGGCTCGATGTACGAGGGATGGTTGTGGCTCTCGGCC 2336 Query 42941 TTGAACGTGACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCCCG 43000 ||||| ||||| ||||| ||||||||||| ||||||||||| |||||||| ||||| ||| Sbjct 2337 TTGAAGGTGACGGCCCACCCCTCGCCGACATCGATGACGCCGGCGTTCTGGCCCATGCCG 2396 Query 43001 ACCATGAGGCGCTCGCGCATCTCGTCCGAGACCTTCTGCCCGAACCTCTTGAGGTAGAGC 43060 ||||||||||||| |||||||||||| |||||| ||||| | || ||| | Sbjct 2397 ACCATGAGGCGCTTGCGCATCTCGTCACTGACCTTGGCGCCGAAACGGCGCAGATAGTTC 2456 Query 43061 TTGCTCGACTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCTCGCCC 43120 ||||| |||||| |||||||| |||||||||||||| |||||||| |||| ||||||| Sbjct 2457 TTGCTGCTCTTGTACGAGCAGTGTTCCGACCACATCACGGAGTACATGGCCAACTCGCCC 2516 Query 43121 GAGGTGGGGCGGCGGCCGAGGATCTCCTTGATCCTCGCGTACTCGTCGTCCTTGAGGCCC 43180 ||||||||||| || ||||||||||| ||| | |||||||||||||||||||||||| Sbjct 2517 GAGGTGGGGCGACGACCGAGGATCTCACGGATGCGCGCGTACTCGTCGTCCTTGAGGCCG 2576 Query 43181 AGCGCCGCGTAGGGCTGCTCCTTCTCCGGAGTCGC 43215 || |||||||||||||||||||||||||||||||| Sbjct 2577 AGGGCCGCGTAGGGCTGCTCCTTCTCCGGAGTCGC 2611 >seq6931 Length=354 Score = 196 bits (216), Expect = 1e-45 Identities = 245/331 (74%), Gaps = 4/331 (1%) Strand=Plus/Minus Query 41661 CGAACTGCCACATGACCTCGGGATTCTCCGGGGAGCCGAAGTTCAGGCAGTCGGTGACCG 41720 ||||||||||||| || |||||||||||||| || |||||||| ||||| ||| |||||| Sbjct 329 CGAACTGCCACATCACATCGGGATTCTCCGGCGACCCGAAGTTGAGGCAATCGCTGACCG 270 Query 41721 CAGTGGGCACGGCGCCGGTGACCGCGACGTTGCGGTAGGCCTCGGCGAGGGCGAGCTGTG 41780 | ||| || |||| | || ||||||||||| || |||||||| || || || || | Sbjct 269 CCAGCGGCTCGCCGCCAGCAACGGCGACGTTGCGATACGCCTCGGCCAGTGCCAGTTGAG 210 Query 41781 CGCCCGCGTACGGGTCGAGCTG-GCAGTAGCGGCCGTTCGCGTCGGTCGCGATCGCGAAC 41839 ||||| |||||||||||| || ||| | ||||| || ||||||||||| |||| Sbjct 209 CGCCCTGGTACGGGTCGAGTTGAGCAA-ACCGGCCATTGCAGTCGGTCGCGACGGCGACG 151 Query 41840 CCGAGGCCCGACTCCTCATCGACGCGGATCATGCCGGCGTCGTC-GGGGAAGCTGAGGGC 41898 |||||| || |||||| ||| | || ||| || ||||| || || || | Sbjct 150 CCGAGGTTGCTGTCGGCATCGATGCGCAGCACGCCTGCATCGTCAGGCTGGGCCGA-CAC 92 Query 41899 CGTGTTGCCGAGCACGTAGTAGTCGTACTGGTTCGTGATCCACGACGTGTCGGCGAGGTT 41958 ||||||||| | ||||| |||||| |||||||||||||||||| | || || ||| Sbjct 91 CGTGTTGCCCTGGACGTAACGGTCGTATTGGTTCGTGATCCACGACTTATCAGCAGAGTT 32 Query 41959 GGGGGAGCTCACGAGCGCGAGGAACTGCTCA 41989 || | |||| | ||||| || ||| || Sbjct 31 AGGCGCTGTCACTACCGCGATGAGTTGCGCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148219326408546