Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9764 161 2e-34 seq15293 159 8e-34 >seq9764 Length=1320143 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | || || ||||||| ||| ||||||||| || || || |||| Sbjct 200102 TCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGA 200043 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | |||||||| | || || || |||||||||| ||| |||||| | || Sbjct 200042 GAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGG 199983 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||||||||| ||||| || ||||||||||||||||| | ||| | ||| || Sbjct 199982 AATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAAC 199923 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || ||||| || ||||| || ||||| || ||||| ||||||||| Sbjct 199922 TTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 199874 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | || || ||||||| ||| ||||||||| || || || |||| Sbjct 200786 TCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGA 200727 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | |||||||| | || || || |||||||||| ||| |||||| | || Sbjct 200726 GAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGG 200667 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||||||||| ||||| || ||||||||||||||||| | ||| | ||| || Sbjct 200666 AATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAAC 200607 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || ||||| || ||||| || ||||| || ||||| ||||||||| Sbjct 200606 TTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 200558 Score = 141 bits (156), Expect = 2e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || ||||| ||||| | ||| || | |||||||| || || || || ||||| Sbjct 200294 TTCTTTCTGAATATTGTAGTCTGAGAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAA 200235 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||| |||||| | || || |||||||| || ||||| || || || ||||| Sbjct 200234 GATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTT 200175 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 |||||| | || | ||| |||||||| ||||| || ||||| || ||||| || || Sbjct 200174 TTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCAC 200115 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 200114 GAAGATCTGCATT 200102 Score = 141 bits (156), Expect = 2e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || ||||| ||||| | ||| || | |||||||| || || || || ||||| Sbjct 200978 TTCTTTCTGAATATTGTAGTCTGAGAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAA 200919 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||| |||||| | || || |||||||| || ||||| || || || ||||| Sbjct 200918 GATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTT 200859 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 |||||| | || | ||| |||||||| ||||| || ||||| || ||||| || || Sbjct 200858 TTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCAC 200799 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 200798 GAAGATCTGCATT 200786 Score = 140 bits (154), Expect = 8e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | || || ||||||| ||| ||||||||| || || || |||| Sbjct 199874 TCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGA 199815 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | |||||||| || || || || |||||||||| ||| |||||| | || Sbjct 199814 GAGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGG 199755 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||||||||| ||||| || ||||| || || ||||||| ||| | ||| || Sbjct 199754 AATGCCTTCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCAC 199695 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || | ||||| || ||||| || ||||| || || || || ||||| ||| Sbjct 199694 CTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCATGATG 199643 Score = 125 bits (138), Expect = 2e-23 Identities = 146/196 (74%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || || | || || | |||||||| | ||| || || ||||| Sbjct 201206 TTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCGTCTTCCAGTTGCTTGCCAGCGAA 201147 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| | ||| ||||| |||| |||||||| ||||| ||||| ||||| || || || Sbjct 201146 GATTAAACGTTGTTG---ATCTGGAGGGATTCCCTCTTTGTCCTGAATTTTGGCCTTTAC 201090 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | || | ||| |||||||| ||||| || || || || ||||| || Sbjct 201089 GTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGGGTGATGGTTTTACCAGTAAGAGTTTT 201030 Query 288459 GACGAATATCTGCATT 288474 ||||| || |||||| Sbjct 201029 CACGAAAATTTGCATT 201014 >seq15293 Length=768699 Score = 159 bits (176), Expect = 8e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || | ||| | || ||||||||| || ||||| || | Sbjct 127297 TCCACCACGTAGACGAAGAACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGA 127356 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || |||||||| | ||| ||||| |||||||||| |||||| ||| | ||| Sbjct 127357 GAGAGTACGACCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGG 127416 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||| ||||| ||||| || ||||| ||||| || || | ||| | || || Sbjct 127417 GATGCCTTCCTTATCTTGGATCTTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCGAC 127476 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || ||||||||||||| ||||| ||||| |||||||| Sbjct 127477 TTCCAGAGTTATGGTCTTCCCGGTCAACGTCTTCACGAAAATCTGCAT 127524 Score = 149 bits (164), Expect = 1e-30 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 288234 GATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGAT 288293 || ||| |||| ||| || | |||| |||||| || |||| || ||||||||| || Sbjct 125689 GAATCAGACATTTCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAAT 125748 Query 288294 ATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTG 288353 ||| ||||||| | || ||||| || || | ||||| || ||||| ||||| | || Sbjct 125749 ATTGTAGTCGGACAAAGTCCGTCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTG 125808 Query 288354 TTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC 288413 |||| || || ||||||||||| || ||||||||||||||||| || || | || Sbjct 125809 TTGATCGGGAGGAATGCCTTCTTTATCTTGAATTTTCGCTTTCACGTTCTCGATCGTGTC 125868 Query 288414 GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||| || || | ||||| || || || || |||||||||||||| |||||||| Sbjct 125869 AGACGCTTCGACCTCCAATGTGATAGTTTTACCAGTGAGAGTCTTGACGAAAATCTGCAT 125928 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| ||||| | || | ||| | || ||| || || || ||||| || | Sbjct 125930 CCACCGCGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAA 125989 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 |||||||| |||||||| | |||||||| || ||||||| | ||| ||| ||||| Sbjct 125990 AGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGA---TCTGGA 126046 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||||||| ||||| ||||| |||||||||||||| || | || | ||| Sbjct 126047 GGGATTCCTTCTTTGTCCTGAATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCG 126106 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| || || ||||| || || ||||| || || ||||| Sbjct 126107 ACTTCCAGAGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || ||||| |||||||| | |||||||| ||||| Sbjct 126193 TTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAA 126252 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || | | ||| ||| ||||| |||||||||||| || || ||||| |||||||| Sbjct 126253 AATTAATCTCTGCTGA---TCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCAC 126309 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | ||| | || ||||| || ||||| || || ||||| || || || Sbjct 126310 GTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTT 126369 Query 288459 GACGAATATCTGCAT 288473 ||| || || ||||| Sbjct 126370 GACAAAAATTTGCAT 126384 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || ||||| |||||||| | |||||||| ||||| Sbjct 126421 TTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAA 126480 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || | | ||| ||| ||||| |||||||||||| || || ||||| |||||||| Sbjct 126481 AATTAATCTCTGCTGA---TCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCAC 126537 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | ||| | || ||||| || ||||| || || ||||| || || || Sbjct 126538 GTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTT 126597 Query 288459 GACGAATATCTGCAT 288473 ||| || || ||||| Sbjct 126598 GACAAAAATTTGCAT 126612 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || ||||| |||||||| | |||||||| ||||| Sbjct 126649 TTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAA 126708 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || | | ||| ||| ||||| |||||||||||| || || ||||| |||||||| Sbjct 126709 AATTAATCTCTGCTGA---TCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCAC 126765 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | ||| | || ||||| || ||||| || || ||||| || || || Sbjct 126766 GTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTT 126825 Query 288459 GACGAATATCTGCAT 288473 ||| || || ||||| Sbjct 126826 GACAAAAATTTGCAT 126840 Score = 111 bits (122), Expect = 4e-19 Identities = 143/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || ||||| |||||||| | |||||||| ||||| Sbjct 126877 TTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAA 126936 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || | | ||| ||| ||||| ||||||||| || || || ||||| ||||| || Sbjct 126937 AATTAATCTCTGCTGA---TCTGGAGGGATTCCTTCCTTGTCTTGAATTTTTGCTTTGAC 126993 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | ||| | || ||||| | |||||| || || || ||||| || || Sbjct 126994 ATTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTT 127053 Query 288459 GACGAATATCTGCATT 288474 ||| || || |||||| Sbjct 127054 GACAAAGATTTGCATT 127069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179421956841962