Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq15293 141 9e-29 seq9764 136 4e-27 seq10177 91.5 1e-13 >seq15293 Length=768699 Score = 141 bits (156), Expect = 9e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | || ||||||||||||||||| ||||| | || || || |||| Sbjct 127312 AAGAACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGACCGTC 127371 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| ||||| ||||| | || | |||||||| || || || || ||||| || || Sbjct 127372 TTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTATC 127431 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || ||| ||||| ||| | |||||| || || ||||| | ||||| ||| Sbjct 127432 TTGGATCTTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAGAGTTATGGT 127491 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| |||||||| || || |||||||| ||||| Sbjct 127492 CTTCCCGGTCAACGTCTTCACGAAAATCTGCAT 127524 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | ||| | || | ||| | || ||||| || |||||||| ||||| | Sbjct 125929 ACCACCGCGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGA 125988 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||||||||| || |||||| | || | | |||||| || ||||| Sbjct 125989 AAGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGG 126048 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||||||||||| || || | |||| ||||| || || | || || || || | Sbjct 126049 GATTCCTTCTTTGTCCTG-AATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCGA 126107 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | ||| | || |||||||| | ||||| || ||||||||||| Sbjct 126108 CTTCCAGAGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | || || | ||| | |||||||| || || |||||||| || | Sbjct 126385 ACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGA 126444 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||||||||| || ||||| |||| | | |||||| || ||||| Sbjct 126445 AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGG 126504 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||||||||||| ||||| | |||| ||||| || || | || || || || | Sbjct 126505 GATTCCTTCTTTGTCTTG-AATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAA 126563 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | ||| | || |||||||| | ||||| || ||||||||||| Sbjct 126564 CTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | || || | ||| | |||||||| || || |||||||| || | Sbjct 126613 ACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGA 126672 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||||||||| || ||||| |||| | | |||||| || ||||| Sbjct 126673 AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGG 126732 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||||||||||| ||||| | |||| ||||| || || | || || || || | Sbjct 126733 GATTCCTTCTTTGTCTTG-AATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAA 126791 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | ||| | || |||||||| | ||||| || ||||||||||| Sbjct 126792 CTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | || || | ||| | |||||||| || || |||||||| || | Sbjct 126841 ACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGA 126900 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||||||||| || ||||| |||| | | |||||| || ||||| Sbjct 126901 AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGG 126960 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||| || ||||| | |||||||||| ||| || | ||||| || || | Sbjct 126961 GATTCCTTCCTTGTCTTG-AATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAA 127019 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| | || | || || || |||| ||||| || || ||||||||| Sbjct 127020 CTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCATT 127069 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | || || | ||| | || ||||| || || |||||||| || | Sbjct 126157 ACCACCACGTAAACGGAGAACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGA 126216 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||||||||| || ||||| |||| | | |||||| || ||||| Sbjct 126217 AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGG 126276 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||||||||||| ||||| | |||| ||||| || || | || || || || | Sbjct 126277 GATTCCTTCTTTGTCTTG-AATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAA 126335 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | ||| | || |||||||| | ||||| || ||||||||||| Sbjct 126336 CTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384 Score = 105 bits (116), Expect = 7e-18 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | |||||||||||||||||||| ||||| | || || || |||| Sbjct 127084 AAGAACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTC 127143 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| ||||| ||||| | || | |||||||| || || || || ||||| || || Sbjct 127144 TTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTC 127203 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | |||| ||||| || || | ||||| || || ||||| | || | | Sbjct 127204 CTG-AATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAG 127262 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | || || |||| ||||| || || ||||||||| Sbjct 127263 TTTTTCCCGTCAGGGTTTTGACAAAGATTTGCATT 127297 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| | | || ||| || || |||| || |||||||||||||| ||||| || | Sbjct 125702 CCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGAC 125761 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || ||||| ||||| || |||| || | || || ||||||||| Sbjct 125762 AAAGTCCGTCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGA 125821 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || |||||||| ||||| | |||| ||||| || ||| | || ||| || || || Sbjct 125822 ATGCCTTCTTTATCTTG-AATTTTCGCTTTCACGTTCTCGATCGTGTCAGACGCTTCGAC 125880 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || || || || | ||| || |||||||| ||||| Sbjct 125881 CTCCAATGTGATAGTTTTACCAGTGAGAGTCTTGACGAAAATCTGCAT 125928 >seq9764 Length=1320143 Score = 136 bits (150), Expect = 4e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||||||||||||||||||||| | || || | ||||| Sbjct 200086 AGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCT 200027 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || | || || || || |||||||| |||||||| ||| Sbjct 200026 TCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCT 199967 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||||| || || | ||||||| ||| || ||||| | || | ||| Sbjct 199966 TGGATCTTG-GCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGT 199908 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | |||||||||||| || |||||| Sbjct 199907 TTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 199874 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||||||||||||||||||||| | || || | ||||| Sbjct 200542 AGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCT 200483 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || | || || || || |||||||| |||||||| ||| Sbjct 200482 TCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCT 200423 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | ||||||| ||| || ||||| | || | ||| Sbjct 200422 TGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACTTCGAGGGTGATGGTT 200363 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | |||||| || || ||||||||| Sbjct 200362 TTCCCAGTGAGAGTTTTCACAAAGATTTGCATT 200330 Score = 136 bits (150), Expect = 4e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||||||||||||||||||||| | || || | ||||| Sbjct 200770 AGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCT 200711 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || | || || || || |||||||| |||||||| ||| Sbjct 200710 TCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCT 200651 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||||| || || | ||||||| ||| || ||||| | || | ||| Sbjct 200650 TGGATCTTG-GCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGT 200592 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | |||||||||||| || |||||| Sbjct 200591 TTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 200558 Score = 125 bits (138), Expect = 7e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||||||||||||||||||||| | || || | ||||| Sbjct 199858 AGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCT 199799 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| || || | || | || || || || |||||||| |||||||| ||| Sbjct 199798 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCT 199739 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| ||| | |||||| || ||||| |||| || | ||| Sbjct 199738 TGGA-TCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCTAAGGTGATGGT 199680 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | |||||| || || |||||||| Sbjct 199679 TTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| ||||||||||| | | || | ||||||| || |||||||| Sbjct 201211 GTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCGTCTTCCAGTTGCTTGCCA 201152 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | || || || || ||||| ||||| ||||| || || ||||| |||| Sbjct 201151 GCGAAGATTAAACGTTGTTGATCTGGAGGGATTCCCTCTTTGTCCTGAATTTTGGCCTTT 201092 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || || || ||||| | || | ||| || || || | |||| Sbjct 201091 ACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGGGTGATGGTTTTACCAGTAAGAGTT 201032 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||||||||||||| Sbjct 201031 TTCACGAAAATTTGCATT 201014 >seq10177 Length=3058365 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||||||||| |||||||| | | || || | || || ||||| ||||| || | | Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 2346172 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 |||| ||||| || || || ||||||||||| || || || || || ||| ||| || Sbjct 2346173 TGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 2346232 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | ||||| || || || || | || | ||| || || || | ||||| |||| Sbjct 2346233 CGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 2346292 Query 64434 AAATTTGCAT 64443 |||| ||||| Sbjct 2346293 AAATCTGCAT 2346302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499548749532760