Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq15293 141 9e-29
seq9764 136 4e-27
seq10177 91.5 1e-13
>seq15293
Length=768699
Score = 141 bits (156), Expect = 9e-29
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || | ||| | || ||||||||||||||||| ||||| | || || || ||||
Sbjct 127312 AAGAACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGACCGTC 127371
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|||||| ||||| ||||| | || | |||||||| || || || || ||||| || ||
Sbjct 127372 TTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTATC 127431
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
||| || ||| ||||| ||| | |||||| || || ||||| | ||||| |||
Sbjct 127432 TTGGATCTTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAGAGTTATGGT 127491
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| |||||||| || || |||||||| |||||
Sbjct 127492 CTTCCCGGTCAACGTCTTCACGAAAATCTGCAT 127524
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | ||| | || | ||| | || ||||| || |||||||| ||||| |
Sbjct 125929 ACCACCGCGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGA 125988
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| ||||||||||||| || |||||| | || | | |||||| || |||||
Sbjct 125989 AAGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGG 126048
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
||||||||||| || || | |||| ||||| || || | || || || || |
Sbjct 126049 GATTCCTTCTTTGTCCTG-AATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCGA 126107
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||| | ||| | || |||||||| | ||||| || |||||||||||
Sbjct 126108 CTTCCAGAGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || || | || || | ||| | |||||||| || || |||||||| || |
Sbjct 126385 ACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGA 126444
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| ||||||||||||| || ||||| |||| | | |||||| || |||||
Sbjct 126445 AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGG 126504
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
||||||||||| ||||| | |||| ||||| || || | || || || || |
Sbjct 126505 GATTCCTTCTTTGTCTTG-AATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAA 126563
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||| | ||| | || |||||||| | ||||| || |||||||||||
Sbjct 126564 CTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || || | || || | ||| | |||||||| || || |||||||| || |
Sbjct 126613 ACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGA 126672
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| ||||||||||||| || ||||| |||| | | |||||| || |||||
Sbjct 126673 AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGG 126732
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
||||||||||| ||||| | |||| ||||| || || | || || || || |
Sbjct 126733 GATTCCTTCTTTGTCTTG-AATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAA 126791
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||| | ||| | || |||||||| | ||||| || |||||||||||
Sbjct 126792 CTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840
Score = 114 bits (126), Expect = 1e-20
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || || | || || | ||| | |||||||| || || |||||||| || |
Sbjct 126841 ACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGA 126900
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| ||||||||||||| || ||||| |||| | | |||||| || |||||
Sbjct 126901 AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGG 126960
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
|||||||| || ||||| | |||||||||| ||| || | ||||| || || |
Sbjct 126961 GATTCCTTCCTTGTCTTG-AATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAA 127019
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|||| | || | || || || |||| ||||| || || |||||||||
Sbjct 127020 CTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCATT 127069
Score = 113 bits (124), Expect = 5e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || || | || || | ||| | || ||||| || || |||||||| || |
Sbjct 126157 ACCACCACGTAAACGGAGAACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGA 126216
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| ||||||||||||| || ||||| |||| | | |||||| || |||||
Sbjct 126217 AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGG 126276
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
||||||||||| ||||| | |||| ||||| || || | || || || || |
Sbjct 126277 GATTCCTTCTTTGTCTTG-AATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAA 126335
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||| | ||| | || |||||||| | ||||| || |||||||||||
Sbjct 126336 CTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384
Score = 105 bits (116), Expect = 7e-18
Identities = 154/215 (72%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || | ||| | |||||||||||||||||||| ||||| | || || || ||||
Sbjct 127084 AAGAACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTC 127143
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|||||| ||||| ||||| | || | |||||||| || || || || ||||| || ||
Sbjct 127144 TTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTC 127203
Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409
|| | |||| ||||| || || | ||||| || || ||||| | || | |
Sbjct 127204 CTG-AATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAG 127262
Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
| || || |||| ||||| || || |||||||||
Sbjct 127263 TTTTTCCCGTCAGGGTTTTGACAAAGATTTGCATT 127297
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
||||| | | || ||| || || |||| || |||||||||||||| ||||| || |
Sbjct 125702 CCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGAC 125761
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | || || ||||| ||||| || |||| || | || || |||||||||
Sbjct 125762 AAAGTCCGTCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGA 125821
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| |||||||| ||||| | |||| ||||| || ||| | || ||| || || ||
Sbjct 125822 ATGCCTTCTTTATCTTG-AATTTTCGCTTTCACGTTCTCGATCGTGTCAGACGCTTCGAC 125880
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | || || || || | ||| || |||||||| |||||
Sbjct 125881 CTCCAATGTGATAGTTTTACCAGTGAGAGTCTTGACGAAAATCTGCAT 125928
>seq9764
Length=1320143
Score = 136 bits (150), Expect = 4e-27
Identities = 160/214 (75%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||||| || ||||||||||||||||||||||| | || || | |||||
Sbjct 200086 AGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCT 200027
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| || | || | || || || || |||||||| |||||||| |||
Sbjct 200026 TCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCT 199967
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||||| || || | ||||||| ||| || ||||| | || | |||
Sbjct 199966 TGGATCTTG-GCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGT 199908
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|| || || | |||||||||||| || ||||||
Sbjct 199907 TTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 199874
Score = 136 bits (150), Expect = 4e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||||| || ||||||||||||||||||||||| | || || | |||||
Sbjct 200542 AGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCT 200483
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| || | || | || || || || |||||||| |||||||| |||
Sbjct 200482 TCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCT 200423
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | ||||||| ||| || ||||| | || | |||
Sbjct 200422 TGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACTTCGAGGGTGATGGTT 200363
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|| || || | |||||| || || |||||||||
Sbjct 200362 TTCCCAGTGAGAGTTTTCACAAAGATTTGCATT 200330
Score = 136 bits (150), Expect = 4e-27
Identities = 160/214 (75%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||||| || ||||||||||||||||||||||| | || || | |||||
Sbjct 200770 AGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCT 200711
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| || | || | || || || || |||||||| |||||||| |||
Sbjct 200710 TCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCT 200651
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||||| || || | ||||||| ||| || ||||| | || | |||
Sbjct 200650 TGGATCTTG-GCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGT 200592
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|| || || | |||||||||||| || ||||||
Sbjct 200591 TTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 200558
Score = 125 bits (138), Expect = 7e-24
Identities = 157/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||||| || ||||||||||||||||||||||| | || || | |||||
Sbjct 199858 AGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCT 199799
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | |||||| || || | || | || || || || |||||||| |||||||| |||
Sbjct 199798 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCT 199739
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| | | || ||||| ||| ||| | |||||| || ||||| |||| || | |||
Sbjct 199738 TGGA-TCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCTAAGGTGATGGT 199680
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || || | |||||| || || ||||||||
Sbjct 199679 TTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647
Score = 100 bits (110), Expect = 3e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| ||||||||||| ||||||||||| | | || | ||||||| || ||||||||
Sbjct 201211 GTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCGTCTTCCAGTTGCTTGCCA 201152
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | || | || || || || ||||| ||||| ||||| || || ||||| ||||
Sbjct 201151 GCGAAGATTAAACGTTGTTGATCTGGAGGGATTCCCTCTTTGTCCTGAATTTTGGCCTTT 201092
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| || | || || || || ||||| | || | ||| || || || | ||||
Sbjct 201091 ACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGGGTGATGGTTTTACCAGTAAGAGTT 201032
Query 64427 TTTACGAAAATTTGCATT 64444
|| |||||||||||||||
Sbjct 201031 TTCACGAAAATTTGCATT 201014
>seq10177
Length=3058365
Score = 91.5 bits (100), Expect = 1e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313
|||||||||| |||||||| | | || || | || || ||||| ||||| || | |
Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 2346172
Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373
|||| ||||| || || || ||||||||||| || || || || || ||| ||| ||
Sbjct 2346173 TGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 2346232
Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433
| | ||||| || || || || | || | ||| || || || | ||||| ||||
Sbjct 2346233 CGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 2346292
Query 64434 AAATTTGCAT 64443
|||| |||||
Sbjct 2346293 AAATCTGCAT 2346302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499548749532760
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