Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq9764 154 1e-32 seq15293 122 6e-23 seq10177 109 4e-19 >seq9764 Length=1320143 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| || || |||||||| |||||||||||| ||| |||| ||||||| Sbjct 199856 AACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTC 199797 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || || || |||||| | |||||||| ||||| || ||||| ||||| || || Sbjct 199796 CAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTG 199737 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| ||| ||| | ||||||||||| | ||| || |||||||| |||||||| Sbjct 199736 GATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCTAAGGTGATGGTTTT 199677 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||| ||||| |||||||| Sbjct 199676 CCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || | || ||||||||| || || || || |||||||| ||||||||||| Sbjct 201241 CCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 201182 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| ||||||| | ||| ||||||||| | || ||||| ||||| || || Sbjct 201181 AGAGTTCTGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGG 201122 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| || ||||| ||||||| ||||| |||| || || || | ||| || Sbjct 201121 ATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACT 201062 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||||||||| || |||||||| || ||||||||||| Sbjct 201061 TCGAGGGTGATGGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCAT 201015 Score = 140 bits (154), Expect = 2e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| || || |||||||| |||||||||||| ||| |||| ||||||| Sbjct 200540 AACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTC 200481 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || ||||||||| | |||||||| ||||| || ||||| ||||| ||||| Sbjct 200480 CAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTG 200421 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| ||||||| ||||| ||| || || | ||| |||||||| Sbjct 200420 GATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACTTCGAGGGTGATGGTTTT 200361 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||| ||||| |||||||| Sbjct 200360 CCCAGTGAGAGTTTTCACAAAGATTTGCAT 200331 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| || || |||||||| |||||||||||| ||| |||| ||||||| Sbjct 200084 AACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTC 200025 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || ||||||||| | |||||||| ||||| || ||||| ||||| || || Sbjct 200024 CAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTG 199965 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| ||| || ||||||| ||||| ||| || || | ||| |||||||| Sbjct 199964 GATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGTTTT 199905 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||||||||| || || ||||| Sbjct 199904 CCCAGTGAGAGTTTTTACGAAGATCTGCAT 199875 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| || || |||||||| |||||||||||| ||| |||| ||||||| Sbjct 200768 AACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTC 200709 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || ||||||||| | |||||||| ||||| || ||||| ||||| || || Sbjct 200708 CAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTG 200649 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| ||| || ||||||| ||||| ||| || || | ||| |||||||| Sbjct 200648 GATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGTTTT 200589 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||||||||| || || ||||| Sbjct 200588 CCCAGTGAGAGTTTTTACGAAGATCTGCAT 200559 >seq15293 Length=768699 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| | ||| || |||||||| ||||| ||||| |||| | | ||||||| Sbjct 127087 AACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTCTTC 127146 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| | ||||||||||| || || ||| || ||||||||||| Sbjct 127147 AAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTG 127206 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||||| ||| || |||| || ||||| || || || || || || ||||| Sbjct 127207 AATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTT 127266 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| ||||| |||||||| Sbjct 127267 TCCCGTCAGGGTTTTGACAAAGATTTGCAT 127296 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| ||||| ||||| |||||||| || || || ||||| ||||| Sbjct 125930 CCACCGCGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAA 125989 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| | ||||| || || | ||||| | ||| || || || Sbjct 125990 AGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGG 126049 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATT-TTCTAC 15128 |||||||| ||||| |||||| ||| || |||| || || || | || ||| || Sbjct 126050 ATTCCTTCTTTGTCCTGAATTTTAGCTTTCACGTTTTCAATCGTGTC-CGATGCTTCGAC 126108 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || || ||||| || || || ||||| ||||||||||||||| Sbjct 126109 TTCCAGAGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCATA 126157 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| | ||| || |||||||| ||||| ||||| |||| | | ||||||| Sbjct 127315 AACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGACCGTCTTC 127374 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| | ||||||||||| || || ||| || |||||||| || Sbjct 127375 AAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTG 127434 Query 15087 AAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 || ||||| |||||| | || || ||||| | || || || | || ||||| | Sbjct 127435 GATCTTTGC-TTTTACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAGAGTTATGGTCT 127493 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT----ATTTGAAATAAATTTTT 15193 | || |||| || || || ||||| ||||| | || |||||| |||| Sbjct 127494 TCCCGGTCAACGTCTTCACGAAAATCTGCATGGTGCTCTGTAATAAAATTTT 127545 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | ||| ||||| | || || || || || |||||||| || Sbjct 126842 CCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAA 126901 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| | ||||| || ||| | || || | ||| || || || Sbjct 126902 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGG 126961 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| |||||| ||| ||| |||| || ||||| || || Sbjct 126962 ATTCCTTCCTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAACT 127021 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 127022 TCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCAT 127068 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | ||| ||||| | ||||| || || || |||||||| || Sbjct 126158 CCACCACGTAAACGGAGAACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGAA 126217 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| | ||||| || ||| | || || | ||| || || || Sbjct 126218 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGG 126277 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| |||||| ||| || |||| || || ||| || || Sbjct 126278 ATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACT 126337 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || || ||||| || || || ||||| ||||||||||||||| Sbjct 126338 TCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCATA 126385 >seq10177 Length=3058365 Score = 109 bits (120), Expect = 4e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15046 ||||||| || ||||||||| ||| | | | || || | |||||||||||| | | Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 2346172 Query 15047 TCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTT 15106 | | |||||||| || |||||||||||||||||| || ||| || ||| | | Sbjct 2346173 TGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 2346232 Query 15107 CTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15166 | || |||||| | ||||| || | ||| ||||||||||| || || ||||| || | Sbjct 2346233 CGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 2346292 Query 15167 AAATTTGCAT 15176 |||| ||||| Sbjct 2346293 AAATCTGCAT 2346302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357325013459015