Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq9764 141 2e-28
seq15293 127 5e-24
seq10177 113 1e-19
>seq9764
Length=1320143
Score = 141 bits (156), Expect = 2e-28
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||||| | || | |||||| || || || ||||||| |||||| |||| | |||
Sbjct 201235 CGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTT 201176
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
|| || |||||||| ||||| || |||||||| | ||| || || || ||| |||||
Sbjct 201175 CTGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGATTCCC 201116
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| |||||||| || ||| ||| ||| | |||||||| | ||| || || |
Sbjct 201115 TCTTTGTCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGG 201056
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || ||||| || ||||||||||| ||||||||
Sbjct 201055 GTGATGGTTTTACCAGTAAGAGTTTTCACGAAAATTTG 201018
Score = 120 bits (132), Expect = 7e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|||||| | ||| || || || || || || || ||||| | |||||| || | | ||
Sbjct 200552 TCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGT 200493
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
|| || |||||||||||||| || |||||||| | ||| || || || ||| ||| ||
Sbjct 200492 TCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCC 200433
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|||| || || ||||| |||||| ||| | || || | | ||| || || |
Sbjct 200432 TTCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACTTCGAG 200373
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || ||||||||||||||||| |||||
Sbjct 200372 GGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTG 200334
Score = 116 bits (128), Expect = 9e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|||||| | ||| || | ||| ||||| || || || || | |||||||| | | ||
Sbjct 200324 TCGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGT 200265
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
||| || ||||||| |||||| || |||||||| | ||| || || || ||| ||| ||
Sbjct 200264 CCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCC 200205
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|||| || || ||||| ||| ||| ||| | ||||| | | ||| || || |
Sbjct 200204 TTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAG 200145
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || |||||||||||||| || || ||
Sbjct 200144 GGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTG 200106
Score = 107 bits (118), Expect = 5e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|||||| | ||| || || || || || || || ||||| | |||||| || | | ||
Sbjct 200096 TCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGT 200037
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
|| || |||||||||||||| || |||||||| | ||| || || || ||| ||| ||
Sbjct 200036 TCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCC 199977
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|||| || || ||||| |||||| ||| | || || | | ||| || || |
Sbjct 199976 TTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAG 199917
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || ||||||||||| || || || ||
Sbjct 199916 GGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTG 199878
Score = 107 bits (118), Expect = 5e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|||||| | ||| || || || || || || || ||||| | |||||| || | | ||
Sbjct 200780 TCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGT 200721
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
|| || |||||||||||||| || |||||||| | ||| || || || ||| ||| ||
Sbjct 200720 TCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCC 200661
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|||| || || ||||| |||||| ||| | || || | | ||| || || |
Sbjct 200660 TTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAG 200601
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || ||||||||||| || || || ||
Sbjct 200600 GGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTG 200562
Score = 107 bits (118), Expect = 5e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|||||| | | || | ||| ||||| || || || || | |||||||| | | ||
Sbjct 201008 TCGAAGACGTAAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGT 200949
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
||| || ||||||| |||||| || |||||||| | ||| || || || ||| ||| ||
Sbjct 200948 CCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCC 200889
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|||| || || ||||| ||| ||| ||| | ||||| | | ||| || || |
Sbjct 200888 TTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAG 200829
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || |||||||||||||| || || ||
Sbjct 200828 GGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTG 200790
Score = 102 bits (112), Expect = 2e-16
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|||||| | ||| || || || || || || || ||||| | |||||| || | | ||
Sbjct 199868 TCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGT 199809
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
|| || ||||||| |||||| || |||||||| | ||| || || || ||| ||| ||
Sbjct 199808 TCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCC 199749
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|||| || || ||||| || || || | || || | | ||| || || ||
Sbjct 199748 TTCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCTAA 199689
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || || |||||||||||||| |||||
Sbjct 199688 GGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTG 199650
>seq15293
Length=768699
Score = 127 bits (140), Expect = 5e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|||||||||| || | || || || || ||||| || | ||| || |||| | ||
Sbjct 125936 CGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTG 125995
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || ||||| ||||| |||||||| ||||| | | |||||| || ||| ||||||
Sbjct 125996 CGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCT 126055
Query 199529 TCTCGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
||| |||||||| ||| |||| |||| ||| | ||||| | || ||| || ||||
Sbjct 126056 TCTTTGTCCTGAAT-TTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCGACTTCCAG 126114
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || ||||| ||||| |||||||||||
Sbjct 126115 AGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTG 126153
Score = 123 bits (136), Expect = 6e-23
Identities = 146/195 (75%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
||||| ||||| |||| ||||||||||| | || | || ||||| ||||| ||||||
Sbjct 126416 GTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCG 126475
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551
||||| || | | |||||| || ||| ||||||||| || ||||| ||| || ||
Sbjct 126476 GCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGAAT-TTTAGCTTT 126534
Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611
|||| ||| | ||||| | || || || |||| ||||| || || || ||||| ||
Sbjct 126535 CACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGT 126594
Query 199612 TTTCACAAAAATTTG 199626
||| |||||||||||
Sbjct 126595 TTTGACAAAAATTTG 126609
Score = 123 bits (136), Expect = 6e-23
Identities = 146/195 (75%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
||||| ||||| |||| ||||||||||| | || | || ||||| ||||| ||||||
Sbjct 126644 GTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCG 126703
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551
||||| || | | |||||| || ||| ||||||||| || ||||| ||| || ||
Sbjct 126704 GCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGAAT-TTTAGCTTT 126762
Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611
|||| ||| | ||||| | || || || |||| ||||| || || || ||||| ||
Sbjct 126763 CACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGT 126822
Query 199612 TTTCACAAAAATTTG 199626
||| |||||||||||
Sbjct 126823 TTTGACAAAAATTTG 126837
Score = 123 bits (136), Expect = 6e-23
Identities = 146/195 (75%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
||||| ||||| |||| ||||||||||| | || | || ||||| ||||| ||||||
Sbjct 126872 GTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCG 126931
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551
||||| || | | |||||| || ||| |||||||| || ||||| |||||| ||
Sbjct 126932 GCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGAAT-TTTTGCTTT 126990
Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611
|| ||||| || |||| || || || ||||||||||| || || ||||| || ||
Sbjct 126991 GACATTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGT 127050
Query 199612 TTTCACAAAAATTTG 199626
||| ||||| |||||
Sbjct 127051 TTTGACAAAGATTTG 127065
Score = 123 bits (136), Expect = 6e-23
Identities = 146/195 (75%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
||||| || ||||| | ||| || |||| | ||| | || ||||| || |||||||||
Sbjct 127100 GTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCG 127159
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551
|||||||| | ||||||||| || || || ||||| |||||||| ||| || ||
Sbjct 127160 GCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTGAAT-TTTGGCTTT 127218
Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611
||| ||||| || |||| || || || ||||||||||| || || ||||| || ||
Sbjct 127219 GACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGT 127278
Query 199612 TTTCACAAAAATTTG 199626
||| ||||| |||||
Sbjct 127279 TTTGACAAAGATTTG 127293
Score = 120 bits (132), Expect = 7e-22
Identities = 145/195 (74%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
|| || ||||| |||| ||||||||||| | || | || ||||| ||||| ||||||
Sbjct 126188 GTAGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCG 126247
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551
||||| || | | |||||| || ||| ||||||||| || ||||| ||| || ||
Sbjct 126248 GCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGAAT-TTTAGCTTT 126306
Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611
|||| ||| | ||||| | || || || |||| ||||| || || || ||||| ||
Sbjct 126307 CACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGT 126366
Query 199612 TTTCACAAAAATTTG 199626
||| |||||||||||
Sbjct 126367 TTTGACAAAAATTTG 126381
Score = 84.2 bits (92), Expect = 5e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989
||| ||| || ||||| || || ||| |||| |||||| |||||||| |||| |||||
Sbjct 125807 AAAGACTGATTTTCGCGGGCAAACAGCTGGAGGATGGACGGACTTTGTCCGACTACAATA 125748
Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030
| || ||||| ||||| ||||||||||| | ||||| ||
Sbjct 125747 TTCAAAAAGAATCTACACTTCACCTTGTACTTCGACTTAGA 125707
>seq10177
Length=3058365
Score = 113 bits (124), Expect = 1e-19
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501
||||| | ||||| || | || ||| | |||||| |||||||| || || |||||||||
Sbjct 2346115 TTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGATG 2346174
Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG 199561
|| ||||| || || || ||||||||| ||||| ||||| ||| || |||
Sbjct 2346175 AGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 2346234
Query 199562 ACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621
| ||| || | | ||||| || | ||||| || ||||||||||| |||||||| |||
Sbjct 2346235 ATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAAA 2346294
Query 199622 ATTTG 199626
|| ||
Sbjct 2346295 ATCTG 2346299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178689301235393
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