Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq9764 141 2e-28 seq15293 127 5e-24 seq10177 113 1e-19 >seq9764 Length=1320143 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| | || | |||||| || || || ||||||| |||||| |||| | ||| Sbjct 201235 CGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTT 201176 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || |||||||| ||||| || |||||||| | ||| || || || ||| ||||| Sbjct 201175 CTGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGATTCCC 201116 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| |||||||| || ||| ||| ||| | |||||||| | ||| || || | Sbjct 201115 TCTTTGTCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGG 201056 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || ||||||||||| |||||||| Sbjct 201055 GTGATGGTTTTACCAGTAAGAGTTTTCACGAAAATTTG 201018 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | ||| || || || || || || || ||||| | |||||| || | | || Sbjct 200552 TCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGT 200493 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || |||||||||||||| || |||||||| | ||| || || || ||| ||| || Sbjct 200492 TCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCC 200433 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| |||||| ||| | || || | | ||| || || | Sbjct 200432 TTCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACTTCGAG 200373 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||||||||||||||| ||||| Sbjct 200372 GGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTG 200334 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | ||| || | ||| ||||| || || || || | |||||||| | | || Sbjct 200324 TCGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGT 200265 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||| || ||||||| |||||| || |||||||| | ||| || || || ||| ||| || Sbjct 200264 CCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCC 200205 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| ||| ||| ||| | ||||| | | ||| || || | Sbjct 200204 TTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAG 200145 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||||||||| || || || Sbjct 200144 GGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTG 200106 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | ||| || || || || || || || ||||| | |||||| || | | || Sbjct 200096 TCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGT 200037 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || |||||||||||||| || |||||||| | ||| || || || ||| ||| || Sbjct 200036 TCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCC 199977 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| |||||| ||| | || || | | ||| || || | Sbjct 199976 TTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAG 199917 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||||||||| || || || || Sbjct 199916 GGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTG 199878 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | ||| || || || || || || || ||||| | |||||| || | | || Sbjct 200780 TCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGT 200721 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || |||||||||||||| || |||||||| | ||| || || || ||| ||| || Sbjct 200720 TCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCC 200661 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| |||||| ||| | || || | | ||| || || | Sbjct 200660 TTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAG 200601 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||||||||| || || || || Sbjct 200600 GGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTG 200562 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | | || | ||| ||||| || || || || | |||||||| | | || Sbjct 201008 TCGAAGACGTAAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGT 200949 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||| || ||||||| |||||| || |||||||| | ||| || || || ||| ||| || Sbjct 200948 CCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCC 200889 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| ||| ||| ||| | ||||| | | ||| || || | Sbjct 200888 TTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAG 200829 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||||||||| || || || Sbjct 200828 GGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTG 200790 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | ||| || || || || || || || ||||| | |||||| || | | || Sbjct 199868 TCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGT 199809 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || ||||||| |||||| || |||||||| | ||| || || || ||| ||| || Sbjct 199808 TCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCC 199749 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| || || || | || || | | ||| || || || Sbjct 199748 TTCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCTAA 199689 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||||||||| ||||| Sbjct 199688 GGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTG 199650 >seq15293 Length=768699 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | || || || || ||||| || | ||| || |||| | || Sbjct 125936 CGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTG 125995 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| ||||| |||||||| ||||| | | |||||| || ||| |||||| Sbjct 125996 CGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCT 126055 Query 199529 TCTCGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||| ||| |||| |||| ||| | ||||| | || ||| || |||| Sbjct 126056 TCTTTGTCCTGAAT-TTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCGACTTCCAG 126114 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| ||||| ||||||||||| Sbjct 126115 AGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTG 126153 Score = 123 bits (136), Expect = 6e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||| ||||| |||| ||||||||||| | || | || ||||| ||||| |||||| Sbjct 126416 GTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCG 126475 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 ||||| || | | |||||| || ||| ||||||||| || ||||| ||| || || Sbjct 126476 GCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGAAT-TTTAGCTTT 126534 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 |||| ||| | ||||| | || || || |||| ||||| || || || ||||| || Sbjct 126535 CACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGT 126594 Query 199612 TTTCACAAAAATTTG 199626 ||| ||||||||||| Sbjct 126595 TTTGACAAAAATTTG 126609 Score = 123 bits (136), Expect = 6e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||| ||||| |||| ||||||||||| | || | || ||||| ||||| |||||| Sbjct 126644 GTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCG 126703 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 ||||| || | | |||||| || ||| ||||||||| || ||||| ||| || || Sbjct 126704 GCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGAAT-TTTAGCTTT 126762 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 |||| ||| | ||||| | || || || |||| ||||| || || || ||||| || Sbjct 126763 CACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGT 126822 Query 199612 TTTCACAAAAATTTG 199626 ||| ||||||||||| Sbjct 126823 TTTGACAAAAATTTG 126837 Score = 123 bits (136), Expect = 6e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||| ||||| |||| ||||||||||| | || | || ||||| ||||| |||||| Sbjct 126872 GTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCG 126931 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 ||||| || | | |||||| || ||| |||||||| || ||||| |||||| || Sbjct 126932 GCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGAAT-TTTTGCTTT 126990 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || ||||| || |||| || || || ||||||||||| || || ||||| || || Sbjct 126991 GACATTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGT 127050 Query 199612 TTTCACAAAAATTTG 199626 ||| ||||| ||||| Sbjct 127051 TTTGACAAAGATTTG 127065 Score = 123 bits (136), Expect = 6e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||| || ||||| | ||| || |||| | ||| | || ||||| || ||||||||| Sbjct 127100 GTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCG 127159 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 |||||||| | ||||||||| || || || ||||| |||||||| ||| || || Sbjct 127160 GCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTGAAT-TTTGGCTTT 127218 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| ||||| || |||| || || || ||||||||||| || || ||||| || || Sbjct 127219 GACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGT 127278 Query 199612 TTTCACAAAAATTTG 199626 ||| ||||| ||||| Sbjct 127279 TTTGACAAAGATTTG 127293 Score = 120 bits (132), Expect = 7e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || ||||| |||| ||||||||||| | || | || ||||| ||||| |||||| Sbjct 126188 GTAGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCG 126247 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 ||||| || | | |||||| || ||| ||||||||| || ||||| ||| || || Sbjct 126248 GCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGAAT-TTTAGCTTT 126306 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 |||| ||| | ||||| | || || || |||| ||||| || || || ||||| || Sbjct 126307 CACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGT 126366 Query 199612 TTTCACAAAAATTTG 199626 ||| ||||||||||| Sbjct 126367 TTTGACAAAAATTTG 126381 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| || ||||| || || ||| |||| |||||| |||||||| |||| ||||| Sbjct 125807 AAAGACTGATTTTCGCGGGCAAACAGCTGGAGGATGGACGGACTTTGTCCGACTACAATA 125748 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 | || ||||| ||||| ||||||||||| | ||||| || Sbjct 125747 TTCAAAAAGAATCTACACTTCACCTTGTACTTCGACTTAGA 125707 >seq10177 Length=3058365 Score = 113 bits (124), Expect = 1e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||| | ||||| || | || ||| | |||||| |||||||| || || ||||||||| Sbjct 2346115 TTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGATG 2346174 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG 199561 || ||||| || || || ||||||||| ||||| ||||| ||| || ||| Sbjct 2346175 AGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 2346234 Query 199562 ACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621 | ||| || | | ||||| || | ||||| || ||||||||||| |||||||| ||| Sbjct 2346235 ATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAAA 2346294 Query 199622 ATTTG 199626 || || Sbjct 2346295 ATCTG 2346299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178689301235393