Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq15293 122 1e-22
seq9764 105 8e-18
seq10177 91.5 2e-13
>seq15293
Length=768699
Score = 122 bits (134), Expect = 1e-22
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| || | |||||| | |||| ||||||||| ||||| ||||| |||||||| ||
Sbjct 126842 CCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAA 126901
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| ||||| |||| || ||||| || |||||||| || || | |||||| || | ||
Sbjct 126902 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGG 126961
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTT-GAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545
| | |||||||| ||| || | ||| || | | | ||| || | || ||
Sbjct 126962 ATTCCTTCCTTGTCT-TGAATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAAC 127020
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|||| |||||| ||||| |||||||| ||||| |||||||||||||||
Sbjct 127021 TTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCATT 127069
Score = 109 bits (120), Expect = 6e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| || | || ||| | |||| ||| || || || ||||| || || || || ||
Sbjct 127070 CCACCACGTAGACGAAGAACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAG 127129
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| || |||| || || ||||| |||||||| ||||| |||||||| || | ||
Sbjct 127130 AGAGTACGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGG 127189
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || ||||||||| || || |||| | | | ||| || | || ||
Sbjct 127190 ATGCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAACT 127249
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|||| |||||| ||||| |||||||| ||||| |||||||||||||||
Sbjct 127250 TCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCATT 127297
>seq9764
Length=1320143
Score = 105 bits (116), Expect = 8e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||||| | ||||| |||||||| | ||| || ||||| || ||||| |||||
Sbjct 200557 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200498
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || | |||| || ||||||||||| ||||| ||||| || || || || | ||
Sbjct 200497 AGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 200438
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || || ||||| |||||| ||| | | | | || || | ||| ||
Sbjct 200437 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACT 200378
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| | ||||||||||| || || || ||||| |||||||||||||||
Sbjct 200377 TCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCATT 200330
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||||| | ||||| |||||||| | ||| || ||||| || ||||| |||||
Sbjct 199873 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 199814
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || | |||| || | |||||| || ||||| ||||| || || || || | ||
Sbjct 199813 AGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 199754
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || || || || |||||| |||| || | | || || | ||||||
Sbjct 199753 ATGCCTTCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACC 199694
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | ||||||||||| || || || ||||| ||||||||||||||
Sbjct 199693 TCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||||| | ||||| |||| || | ||| || || || ||||||||||| ||
Sbjct 200329 CCTCCTCGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAG 200270
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || | |||| || | ||||||||| ||||| ||||| || || || || | ||
Sbjct 200269 AGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 200210
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || || ||||| |||||| ||| | | | | ||||| | ||| ||
Sbjct 200209 ATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 200150
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| | ||||||||||| || || || ||||| || ||||| ||||||
Sbjct 200149 TCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCATT 200102
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||||| | ||| || |||| || | ||| || || || ||||||||||| ||
Sbjct 201013 CCTCCTCGAAGACGTAAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAG 200954
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || | |||| || | ||||||||| ||||| ||||| || || || || | ||
Sbjct 200953 AGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 200894
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || || ||||| |||||| ||| | | | | ||||| | ||| ||
Sbjct 200893 ATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 200834
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| | ||||||||||| || || || ||||| || ||||| ||||||
Sbjct 200833 TCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCATT 200786
>seq10177
Length=3058365
Score = 91.5 bits (100), Expect = 2e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 46406 TTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 46465
||||| |||||||| ||||| ||||| || | || || ||||| ||||| ||||| ||
Sbjct 2346115 TTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGATG 2346174
Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC 46525
| ||||| || || | || | | ||||||||| |||||| ||||| || |
Sbjct 2346175 AGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 2346234
Query 46526 ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585
| || ||| | || || || | ||||||||||| ||||| || ||||| || ||
Sbjct 2346235 ATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAAA 2346294
Query 46586 ATTTGCAT 46593
|| |||||
Sbjct 2346295 ATCTGCAT 2346302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565129739983080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |