Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq15293 86.0 4e-12 seq9764 82.4 5e-11 >seq15293 Length=768699 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| || || ||||||||| || |||||||| | Sbjct 127070 CCACCACGTAGACGAAGAACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAG 127129 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || | || || | ||| || ||| | || || |||||||||||||| | || Sbjct 127130 AGAGTACGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGG 127189 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| ||||| ||| | | | | || |||| || || Sbjct 127190 ATGCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAACT 127249 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| ||||| | ||||| || ||||| ||||| Sbjct 127250 TCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCAT 127296 >seq9764 Length=1320143 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | |||||| |||| ||| | ||| ||||||||| || || ||||||| Sbjct 200101 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200042 Query 39553 AAAACGCGTTCA----TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | | |||| || |||| || || || | || || ||||| || ||||| | Sbjct 200041 A----GTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGG 199986 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | ||||||||| || || || ||| | | ||| ||| || | | ||| Sbjct 199985 AGGAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTC 199926 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || || ||||| || || | ||||||||||||||||||||| Sbjct 199925 AACTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 199875 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | |||||| |||| ||| | ||| ||||||||| || || ||||||| Sbjct 200785 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200726 Query 39553 AAAACGCGTTCA----TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | | |||| || |||| || || || | || || ||||| || ||||| | Sbjct 200725 A----GTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGG 200670 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | ||||||||| || || || ||| | | ||| ||| || | | ||| Sbjct 200669 AGGAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTC 200610 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || || ||||| || || | ||||||||||||||||||||| Sbjct 200609 AACTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 200559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347304491973107