Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq15293 154 1e-32 seq9764 131 2e-25 seq10177 123 2e-23 >seq15293 Length=768699 Score = 154 bits (170), Expect = 1e-32 Identities = 167/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||||||||| |||||||| ||||| | || || ||||| || Sbjct 126612 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126553 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||||| | |||| ||||| | |||||||| ||||| || | || || Sbjct 126552 GACACGATTGAAAACG-TGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCA 126494 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | |||| ||| || |||||||| || |||| ||||| || |||||||| Sbjct 126493 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126434 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 |||||| |||||| |||| |||||||||| || ||||| Sbjct 126433 CATCCAGAAGGAATCGACATTGCATTTGGTTCTCCGTTT 126395 Score = 154 bits (170), Expect = 1e-32 Identities = 167/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||||||||| |||||||| ||||| | || || ||||| || Sbjct 126840 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126781 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||||| | |||| ||||| | |||||||| ||||| || | || || Sbjct 126780 GACACGATTGAAAACG-TGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCA 126722 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | |||| ||| || |||||||| || |||| ||||| || |||||||| Sbjct 126721 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126662 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 |||||| |||||| |||| |||||||||| || ||||| Sbjct 126661 CATCCAGAAGGAATCGACATTGCATTTGGTTCTCCGTTT 126623 Score = 149 bits (164), Expect = 6e-31 Identities = 166/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||||||||| |||||||| ||||| | || || ||||| || Sbjct 126384 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126325 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||||| | |||| ||||| | |||||||| ||||| || | || || Sbjct 126324 GACACGATTGAAAACG-TGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCA 126266 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | |||| ||| || |||||||| || |||| ||||| || |||||||| Sbjct 126265 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126206 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 |||||| |||||| | || |||||||||| || ||||| Sbjct 126205 CATCCAGAAGGAATCTACATTGCATTTGGTTCTCCGTTT 126167 Score = 129 bits (142), Expect = 6e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| || ||||| ||||| ||||| | || || ||||| | Sbjct 127069 AATGCAAATCTTTGTCAAAACCCTGACGGGAAAAACTATCACGTTGGAAGTTGAGGCATC 127010 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | ||| | |||| |||||| | ||||| || ||||| || | || || Sbjct 127009 AGATACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCA 126950 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | |||| ||| || |||||||| || |||| ||||| || |||||||| Sbjct 126949 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126890 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 |||||| |||||| |||| |||||||||| || ||||| Sbjct 126889 CATCCAGAAGGAATCGACATTGCATTTGGTTCTCCGTTT 126851 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| |||||||| ||||| | || ||||| || | Sbjct 126156 ATGCAAATTTTTGTCAAAACACTCACCGGCAAAACAATCACTCTGGAAGTCGAAGCATCG 126097 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||||| | |||| ||||| | |||||||| ||||| || | || || Sbjct 126096 GACACGATTGAAAACG-TGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCAGATCA 126038 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || |||||||| || |||| ||||| || || || || Sbjct 126037 GCAGAGATTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACGCTTTCTGATTATAA 125978 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||| || |||||| | || ||||||||||| Sbjct 125977 CATTCAGAAGGAATCTACCCTGCATTTGGT 125948 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || ||||| ||||| | || ||||| || | Sbjct 125928 ATGCAGATTTTCGTCAAGACTCTCACTGGTAAAACTATCACATTGGAGGTCGAAGCGTCT 125869 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| ||||| | || ||||| || ||||| |||| || Sbjct 125868 GACACGATCGAGAACG-TGAAAGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCA 125810 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || |||| |||||||||||||||||| || | || || | ||||||||| Sbjct 125809 ACAAAGACTGATTTTCGCGGGCAAACAGCTGGAGGATGGACGGACTTTGTCCGACTACAA 125750 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || || | || || || | |||||||| Sbjct 125749 TATTCAAAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGG 125702 >seq9764 Length=1320143 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||||||||| ||||| || |||||||||||| | || || || ||| | Sbjct 199874 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 199933 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | ||||| | |||| || |||| || ||||| || ||||| | || | Sbjct 199934 TGATACAATAGAAAACG-TGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATC 199992 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || | || | ||| ||||| |||||||| |||| | || ||| ||| |||| Sbjct 199993 AACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACA 200052 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| ||||| ||| | || || ||| |||| |||||| | |||| || Sbjct 200053 ACATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGG 200101 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||||||||| ||||| || |||||||||||| | || || || ||| | Sbjct 200558 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 200617 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | ||||| | |||| || |||| || ||||| || ||||| | || | Sbjct 200618 TGATACAATAGAAAACG-TGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATC 200676 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || | || | ||| ||||| |||||||| |||| | || ||| ||| |||| Sbjct 200677 AACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACA 200736 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| ||||| ||| | || || ||| |||| |||||| | |||| || Sbjct 200737 ACATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGG 200785 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| ||||| || |||||||||||| |||| || || ||| | Sbjct 200330 AATGCAAATCTTTGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200389 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | ||| | || | || |||| |||||||| || ||||| | || || Sbjct 200390 TGATACAATAGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200449 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||| |||||||| |||| | || ||| ||| ||||| Sbjct 200450 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200509 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| ||||| ||| | || || ||| |||| |||||| | |||| || Sbjct 200510 CATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGG 200557 Score = 125 bits (138), Expect = 7e-24 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| ||||| || |||||||||||| |||| || || ||| | Sbjct 200102 AATGCAGATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200161 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | || | || |||| |||||||| || ||||| | || | Sbjct 200162 TGACACAATAGAAAACG-TAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATC 200220 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTA 38419 |||| || | || | ||| ||||| ||| |||| |||| || ||| |||| ||||| Sbjct 200221 AACAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCA--GACTA 200278 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || || || ||| | || || || ||||| |||||| | |||| || Sbjct 200279 CAATATTCAGAAAGAATCTACTCTTCACTTGGTTCTGCGTCTTCGAGGAGG 200329 Score = 122 bits (134), Expect = 9e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| || || || |||||||||||| |||| ||||| || | Sbjct 201014 AATGCAAATTTTCGTGAAAACTCTTACTGGTAAAACCATCACCCTCGAAGTCGAAGCTTC 201073 Query 38303 CGACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | || ||||| | || | ||||| | |||||||||||||| || | || | Sbjct 201074 AGACACCATTGAAAACG-TAAAGGCCAAAATTCAGGACAAAGAGGGAATCCCTCCAGATC 201132 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || | || | ||| ||||| || ||||| |||| | || || || |||| Sbjct 201133 AACAACGTTTAATCTTCGCTGGCAAGCAACTGGAAGACGGCAGAACTCTTTCTGATTACA 201192 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||||||| ||| | || || || || || Sbjct 201193 ACATCCAAAAAGAATCCACACTCCACTTAGT 201223 Score = 116 bits (128), Expect = 4e-21 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| ||||| || |||||||||||| |||| || || ||| | Sbjct 200786 AATGCAGATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200845 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | || | || |||| |||||||| || ||||| | || | Sbjct 200846 TGACACAATAGAAAACG-TAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATC 200904 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTA 38419 |||| || | || | ||| ||||| ||| |||| |||| || ||| |||| ||||| Sbjct 200905 AACAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCA--GACTA 200962 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || || || ||| | || || || ||||| | ||| | |||| || Sbjct 200963 CAATATTCAGAAAGAATCTACTCTTCACTTGGTTTTACGTCTTCGAGGAGG 201013 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || || |||||||||||| | || || || || | Sbjct 199647 ATGCAAATCTTTGTGAAAACTCTTACTGGGAAAACCATCACCTTAGAGGTGGAAGCTTCT 199706 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| || |||| || ||||| || ||||| | || ||| Sbjct 199707 GATACTATAGAGAATGTCAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCAA 199766 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || || ||| |||| |||| | || ||| ||| |||||| Sbjct 199767 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCCGATTACAAC 199826 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || ||| |||| |||||| | |||| || Sbjct 199827 ATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGG 199873 >seq10177 Length=3058365 Score = 123 bits (136), Expect = 2e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| |||||||| |||||||||||| |||| || ||||| || Sbjct 2346302 ATGCAGATTTTCGTGAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCTTCC 2346243 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||||| || |||||||| | || ||| Sbjct 2346242 GATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAA 2346183 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| |||||||||||||| || | || || || ||| ||||| Sbjct 2346182 CAGCGACTCATCTTCGCTGGCAAACAGCTGGAGGATGGACGTACTCTGTCCGATTACAAT 2346123 Query 38424 ATCCAAAA 38431 || ||||| Sbjct 2346122 ATTCAAAA 2346115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500076648031360