Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq10440 183 2e-40
seq10556 129 4e-24
seq9994 123 2e-22
seq10535 114 1e-19
seq11804 93.3 3e-13
>seq10440
Length=2225863
Score = 183 bits (202), Expect = 2e-40
Identities = 670/1038 (65%), Gaps = 12/1038 (1%)
Strand=Plus/Plus
Query 517275 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 517334
||||||| || || | |||||| |||||||| ||||| || || |||| | || || |
Sbjct 2122287 TACCATTAGCGTCGATATCAAAAGTGACTTCGATTTGCGGAACACCTCGAGGCGCTGGAG 2122346
Query 517335 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 517394
| || || || | |||| | || || | |||||||| || || | || || |
Sbjct 2122347 GAATACCCGTCAGCTCAAATTTGCCGAGGATGTTATTATCCTTCGTCATCGCTCTCTCTC 2122406
Query 517395 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 517454
||||| | | || ||| ||| | | |||||| || || || || || || |||||
Sbjct 2122407 CCTCGTAGACCTGTATAAGCACTCCCGGTTGATTGTCGGAGTACGTGGTGAACG-TCTGG 2122465
Query 517455 ATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513
| | || | || || || ||||| || | ||| | | ||||||| || || ||
Sbjct 2122466 GTCTGTTTCGTTGGTATCGTCGTGTTCCTCTTAATCAAGGTAGTCATAACGCCGCCAGCG 2122525
Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 517573
||||| | ||| | || | ||||| || || | ||| | | || ||| | || ||
Sbjct 2122526 GTTTCAATACCCAATGACAACGGAGTCACGTCCAGTAGAAGTAGATCTTGGACTTCCTCG 2122585
Query 517574 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 517633
| | || ||||| || || |||| || |||||||| ||||| || || ||
Sbjct 2122586 GACTTGTCGCCGTGCAGAATGGCCGCCTGAACTGCCGCACCATAAGCAACGGCCTCGTCC 2122645
Query 517634 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACC 517693
||||| | | || ||| |||| || || || || |||| | ||| || | ||| |
Sbjct 2122646 GGATTGATGGATTTATTCAGTTCCTTGCCGTTAAAGAAATCTTGAAGTAGCT-TCTGAAT 2122704
Query 517694 TTA-GGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 517752
|| || || | | || || || |||| || || || || || | ||||||||
Sbjct 2122705 TTTTGGTATCCTGGTGGAGCCACCGACTAGAACGATGCTGTGAACTTGGGCTTTATCCAT 2122764
Query 517753 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACA 517812
|| | || | | ||||| |||||||||||| |||||||| || | ||
Sbjct 2122765 CTTCGCGTCTCTAAGCGCCTTTTCCACGGGTTCAAGAGTGCTTCTAAACAGATCGGCGCA 2122824
Query 517813 AAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAA 517870
|| || |||||| | |||||||| | | || | || || ||||| || || |||||
Sbjct 2122825 GAGCTCCTCGAATCTGGCTCTAGTTACCG--ACGTATAGAAGTCAATGCCCTCAAACAAT 2122882
Query 517871 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 517930
||||| | ||| || | | || || || || | || | || || | || ||
Sbjct 2122883 GAATCGATTTCGATGCTCGCCTGCGTTGATGAGCTCAATGTTCTCTTCGCTCTCTCGCAA 2122942
Query 517931 GCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATTTTC 517988
|| ||||| || | || | ||| | || ||| | ||| |||| | || ||||| |
Sbjct 2122943 GCAGTCCTCAGACGTCTCAGAGCTCT--CTTGTTGCTGCTCAGATCTTTCTTGTATTTCC 2123000
Query 517989 TCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATT 518048
|||| || |||| ||| | | || | || || ||||| || || || || | |
Sbjct 2123001 TCTTAAATTCTTGCACAAAGTGGTTCACCATTCGGTTGTCAAAGTCCTCGCCACCGAGAT 2123060
Query 518049 TAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTA 518108
|| | || | ||| | | |||| | || | ||||| || | | || || | |
Sbjct 2123061 GCGTGTCGCCGGCCGTGGATTTTACCTCAAAGATACCATCCTCGATCGTCAGAATCGACA 2123120
Query 518109 CATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTT 518168
| ||| ||| || ||||||| || || || | || ||| |||| | || |
Sbjct 2123121 CGTCAAAGGTACCGCCACCCAAGTCGAAGATCAAAACGTTCTTTTCACCTGCAGCCTTCT 2123180
Query 518169 TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAA 518228
| || ||||||||||| | || || || || || || || || ||||| | ||| || |
Sbjct 2123181 TGTCGAGACCATACGCTATCGCGGCGGCTGTGGGCTCGTTTATTATTCTGAGAACGTTCA 2123240
Query 518229 GACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAG 518288
| |||||||| || ||||| || || ||||| || || || || || ||||| || |
Sbjct 2123241 GGCCAGCAATAGCGCCGGCATCCTTTGTTGCTTGCCTCTGAGAGTCATTGAAATAAGCCG 2123300
Query 518289 GAACAGTAATAACGGCAT 518306
| ||||| || |||||||
Sbjct 2123301 GCACAGTGATGACGGCAT 2123318
>seq10556
Length=418102
Score = 129 bits (142), Expect = 4e-24
Identities = 439/679 (65%), Gaps = 4/679 (1%)
Strand=Plus/Minus
Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318
|||| ||||| || ||||| || ||||| | || || || |||||||| ||||| ||
Sbjct 88133 GCAGAGACATTGAGGATACCGTTCGCATCGATGTCGAACGTCACTTCAATCTGAGGAACT 88074
Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTA-AATGTTCCCAGATTATTATTATCTTT 517377
|| | | || ||||| || || | || || ||| | ||||| ||||||||| ||
Sbjct 88073 CCACGGGGTGCTGGTGGAATACCG-CTAAGTTCGAATTTACCCAGTAGATTATTATCCTT 88015
Query 517378 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 517437
|| | || |||||||| | | ||| || || ||| |||||| || | ||
Sbjct 88014 GGTCATGGCGCGCTCACCCTCATATACTTGAATCAACACACCAGGTTGATTGTCGGCGTA 87955
Query 517438 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497
||||||||| | | | || || || || || ||||| | ||||| |||
Sbjct 87954 AGTTGTAAAGGTTTGAGTCTGCTTCGTCGGGATGGTGGTATTTCTCTTAATAAGCGCGGT 87895
Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557
||| | ||| || || || || | ||| ||||| || |||||||| |||| ||| | |
Sbjct 87894 CATGACACCGCCGGCAGTCTCGATACCCAGAGAGAGCGGAGTGACGTCAAGTAGAAGCAA 87835
Query 517558 ATTTTGAAGTTTTTCATCAGTTTGACC-AACAAGAATAGCTGCTTGAATAGCAGCACCAT 517616
| ||| | | ||| | | ||| |||| |||||||| || | ||| || ||||
Sbjct 87834 GTCTTGCACCTCTTCGGATTTATCACCGTGCAAG-ATAGCTGCCTGTACAGCCGCGCCAT 87776
Query 517617 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTG 517676
| || ||||| || || ||||| | || || || || | ||| || ||||| || |
Sbjct 87775 AAGCGACAGCCTCGTCGGGATTGATAGATTTGTTGAGCTCTTTGCCGTTGAAGAAGTCCT 87716
Query 517677 AAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 517736
|| || | | | ||| || || || | || ||||| || || || || || || |
Sbjct 87715 GTAGGAGCTTTTGAATCTTGGGGATTCGCGTAGAGCCTCCGACCAAGACGATATCGTGGA 87656
Query 517737 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTC 517796
|| | ||| |||| || | || || ||| ||||| ||||||||| | |
Sbjct 87655 TTTGAGCTTTGTCCATCTTGGCGTCGCGCAACGATTTCTCAACAGGTTCAAGAGTACCGC 87596
Query 517797 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAA 517856
|| | || | || ||||| ||||| || | || | | | | |||| |
Sbjct 87595 GGAAGAGATCGGCGCAGAGTTCCTCGAAACGGGCACGGGTGATGGAGGTGTAGAAATCGA 87536
Query 517857 TTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTT 517916
|||| ||| |||| ||||||| || || | | || || || || || || | ||| |
Sbjct 87535 TTCCCTCGTACAACGAATCAATCTCGATGCTGGCCTGGGTGGAGGACGACAGGGTACGCT 87476
Query 517917 TAGCACGTTCACATGCTGT 517935
| |||||||| || || ||
Sbjct 87475 TGGCACGTTCGCAGGCCGT 87457
>seq9994
Length=6265506
Score = 123 bits (136), Expect = 2e-22
Identities = 144/194 (74%), Gaps = 3/194 (2%)
Strand=Plus/Plus
Query 870791 AAGAAAA---TTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGA 870847
||||||| | ||||| |||| |||| ||| || ||||| || ||||||||| | |||
Sbjct 975687 AAGAAAAGAGTAATTGTAGATTTTTCTAGTCCTAACATTGCCAAGGAAATGCATGTCGGA 975746
Query 870848 CATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACAC 870907
|| |||||||| || || ||||| || ||| | ||| | |||||| | |||||
Sbjct 975747 CACTTAAGATCTACGATAATTGGAGACAGTATCTCAAGGTTGTTAGAATACTTAGGACAT 975806
Query 870908 GATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCT 870967
||||| | | |||||||||| ||||||||||| || ||||| |||||||| || ||
Sbjct 975807 GATGTATTGAGACTTAATCATGTAGGTGATTGGGGTACACAATTTGGTATGTTGATAGCA 975866
Query 870968 TATATTAAAAATAA 870981
|| || || ||||
Sbjct 975867 CATCTTCAAGATAA 975880
>seq10535
Length=209863
Score = 114 bits (126), Expect = 1e-19
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214
||| |||| | |||||| | ||||| |||| ||||| |||||||| |||||||| |
Sbjct 206655 TTTATCTTCTTGTTTATCCATTCCATAAGCAAGTGCAGCTGCAGTTGGCTCATTAATTAC 206714
Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274
| | ||||| | || ||||| || ||||| || || ||||||| |||||||||
Sbjct 206715 ACGAAGCACATTCAATCCTGCAATCTGACCAGCATCCTTTGTCGCTTGTCGTTGTGAATC 206774
Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCT 518334
|||||||| || || ||||||||||| |||| ||||| || | ||||||
Sbjct 206775 ATTAAAATACGCTGGTACAGTAATAACAGCATTCTTTACTGGAGTATTTAAATAAGCTGC 206834
Query 518335 TGCCGTTTGTTTCATTTT 518352
|| |||| |||||||||
Sbjct 206835 AGCAGTTTCTTTCATTTT 206852
Score = 104 bits (114), Expect = 2e-16
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303
|| || ||||| || ||||||||||| |||||||||| ||| |||| || || |||
Sbjct 206677 CCATAAGCAAGTGCAGCTGCAGTTGGCTCATTAATTACACGAAGCACATTCAATCCTGCA 206736
Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363
|| | | ||| ||| || ||||||| |||| ||||||||||| ||||||||||||
Sbjct 206737 ATCTGACCAGCATCCTTTGTCGCTTGTCGTTGTGAATCATTAAAATACGCTGGTACAGTA 206796
Query 322364 ATAACTGCTTTATTAATAGGTTTTTGTAAATA 322395
||||| || || || | || | | ||||||
Sbjct 206797 ATAACAGCATTCTTTACTGGAGTATTTAAATA 206828
>seq11804
Length=2961632
Score = 93.3 bits (102), Expect = 3e-13
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 668847 GATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGT 668906
|||| | || ||||| ||| | ||| | || ||||||||||| |||||||| || | |
Sbjct 1774985 GATTGAAGGGAAAAGAGGGTAGAATTCGTGGGAATTTGATGGGTAAACGTGTGGACTTCT 1774926
Query 668907 CTGCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTC 668966
|||||||||| ||||| ||| ||||||||||| | | | || |||| || || || |
Sbjct 1774925 CTGCACGTACTGTTATCACTCCTGATCCCAATTTACGTATTGATCAAGTAGGCGTACCGC 1774866
Query 668967 TTATTATTGCTAAAAATCTTACTTTTGACGAAATTGTAACA 669007
| ||| || ||||||| || || || ||||| |||
Sbjct 1774865 GCAGTATAGCCCAAAATCTGACATTCCCTGAGATTGTGACA 1774825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780059243361574
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |