Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq10440 183 2e-40 seq10556 129 4e-24 seq9994 123 2e-22 seq10535 114 1e-19 seq11804 93.3 3e-13 >seq10440 Length=2225863 Score = 183 bits (202), Expect = 2e-40 Identities = 670/1038 (65%), Gaps = 12/1038 (1%) Strand=Plus/Plus Query 517275 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 517334 ||||||| || || | |||||| |||||||| ||||| || || |||| | || || | Sbjct 2122287 TACCATTAGCGTCGATATCAAAAGTGACTTCGATTTGCGGAACACCTCGAGGCGCTGGAG 2122346 Query 517335 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 517394 | || || || | |||| | || || | |||||||| || || | || || | Sbjct 2122347 GAATACCCGTCAGCTCAAATTTGCCGAGGATGTTATTATCCTTCGTCATCGCTCTCTCTC 2122406 Query 517395 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 517454 ||||| | | || ||| ||| | | |||||| || || || || || || ||||| Sbjct 2122407 CCTCGTAGACCTGTATAAGCACTCCCGGTTGATTGTCGGAGTACGTGGTGAACG-TCTGG 2122465 Query 517455 ATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 | | || | || || || ||||| || | ||| | | ||||||| || || || Sbjct 2122466 GTCTGTTTCGTTGGTATCGTCGTGTTCCTCTTAATCAAGGTAGTCATAACGCCGCCAGCG 2122525 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 517573 ||||| | ||| | || | ||||| || || | ||| | | || ||| | || || Sbjct 2122526 GTTTCAATACCCAATGACAACGGAGTCACGTCCAGTAGAAGTAGATCTTGGACTTCCTCG 2122585 Query 517574 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 517633 | | || ||||| || || |||| || |||||||| ||||| || || || Sbjct 2122586 GACTTGTCGCCGTGCAGAATGGCCGCCTGAACTGCCGCACCATAAGCAACGGCCTCGTCC 2122645 Query 517634 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACC 517693 ||||| | | || ||| |||| || || || || |||| | ||| || | ||| | Sbjct 2122646 GGATTGATGGATTTATTCAGTTCCTTGCCGTTAAAGAAATCTTGAAGTAGCT-TCTGAAT 2122704 Query 517694 TTA-GGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 517752 || || || | | || || || |||| || || || || || | |||||||| Sbjct 2122705 TTTTGGTATCCTGGTGGAGCCACCGACTAGAACGATGCTGTGAACTTGGGCTTTATCCAT 2122764 Query 517753 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACA 517812 || | || | | ||||| |||||||||||| |||||||| || | || Sbjct 2122765 CTTCGCGTCTCTAAGCGCCTTTTCCACGGGTTCAAGAGTGCTTCTAAACAGATCGGCGCA 2122824 Query 517813 AAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAA 517870 || || |||||| | |||||||| | | || | || || ||||| || || ||||| Sbjct 2122825 GAGCTCCTCGAATCTGGCTCTAGTTACCG--ACGTATAGAAGTCAATGCCCTCAAACAAT 2122882 Query 517871 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 517930 ||||| | ||| || | | || || || || | || | || || | || || Sbjct 2122883 GAATCGATTTCGATGCTCGCCTGCGTTGATGAGCTCAATGTTCTCTTCGCTCTCTCGCAA 2122942 Query 517931 GCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATTTTC 517988 || ||||| || | || | ||| | || ||| | ||| |||| | || ||||| | Sbjct 2122943 GCAGTCCTCAGACGTCTCAGAGCTCT--CTTGTTGCTGCTCAGATCTTTCTTGTATTTCC 2123000 Query 517989 TCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATT 518048 |||| || |||| ||| | | || | || || ||||| || || || || | | Sbjct 2123001 TCTTAAATTCTTGCACAAAGTGGTTCACCATTCGGTTGTCAAAGTCCTCGCCACCGAGAT 2123060 Query 518049 TAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTA 518108 || | || | ||| | | |||| | || | ||||| || | | || || | | Sbjct 2123061 GCGTGTCGCCGGCCGTGGATTTTACCTCAAAGATACCATCCTCGATCGTCAGAATCGACA 2123120 Query 518109 CATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTT 518168 | ||| ||| || ||||||| || || || | || ||| |||| | || | Sbjct 2123121 CGTCAAAGGTACCGCCACCCAAGTCGAAGATCAAAACGTTCTTTTCACCTGCAGCCTTCT 2123180 Query 518169 TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAA 518228 | || ||||||||||| | || || || || || || || || ||||| | ||| || | Sbjct 2123181 TGTCGAGACCATACGCTATCGCGGCGGCTGTGGGCTCGTTTATTATTCTGAGAACGTTCA 2123240 Query 518229 GACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAG 518288 | |||||||| || ||||| || || ||||| || || || || || ||||| || | Sbjct 2123241 GGCCAGCAATAGCGCCGGCATCCTTTGTTGCTTGCCTCTGAGAGTCATTGAAATAAGCCG 2123300 Query 518289 GAACAGTAATAACGGCAT 518306 | ||||| || ||||||| Sbjct 2123301 GCACAGTGATGACGGCAT 2123318 >seq10556 Length=418102 Score = 129 bits (142), Expect = 4e-24 Identities = 439/679 (65%), Gaps = 4/679 (1%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||||| || ||||| || ||||| | || || || |||||||| ||||| || Sbjct 88133 GCAGAGACATTGAGGATACCGTTCGCATCGATGTCGAACGTCACTTCAATCTGAGGAACT 88074 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTA-AATGTTCCCAGATTATTATTATCTTT 517377 || | | || ||||| || || | || || ||| | ||||| ||||||||| || Sbjct 88073 CCACGGGGTGCTGGTGGAATACCG-CTAAGTTCGAATTTACCCAGTAGATTATTATCCTT 88015 Query 517378 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 517437 || | || |||||||| | | ||| || || ||| |||||| || | || Sbjct 88014 GGTCATGGCGCGCTCACCCTCATATACTTGAATCAACACACCAGGTTGATTGTCGGCGTA 87955 Query 517438 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 ||||||||| | | | || || || || || ||||| | ||||| ||| Sbjct 87954 AGTTGTAAAGGTTTGAGTCTGCTTCGTCGGGATGGTGGTATTTCTCTTAATAAGCGCGGT 87895 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| | ||| || || || || | ||| ||||| || |||||||| |||| ||| | | Sbjct 87894 CATGACACCGCCGGCAGTCTCGATACCCAGAGAGAGCGGAGTGACGTCAAGTAGAAGCAA 87835 Query 517558 ATTTTGAAGTTTTTCATCAGTTTGACC-AACAAGAATAGCTGCTTGAATAGCAGCACCAT 517616 | ||| | | ||| | | ||| |||| |||||||| || | ||| || |||| Sbjct 87834 GTCTTGCACCTCTTCGGATTTATCACCGTGCAAG-ATAGCTGCCTGTACAGCCGCGCCAT 87776 Query 517617 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTG 517676 | || ||||| || || ||||| | || || || || | ||| || ||||| || | Sbjct 87775 AAGCGACAGCCTCGTCGGGATTGATAGATTTGTTGAGCTCTTTGCCGTTGAAGAAGTCCT 87716 Query 517677 AAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 517736 || || | | | ||| || || || | || ||||| || || || || || || | Sbjct 87715 GTAGGAGCTTTTGAATCTTGGGGATTCGCGTAGAGCCTCCGACCAAGACGATATCGTGGA 87656 Query 517737 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTC 517796 || | ||| |||| || | || || ||| ||||| ||||||||| | | Sbjct 87655 TTTGAGCTTTGTCCATCTTGGCGTCGCGCAACGATTTCTCAACAGGTTCAAGAGTACCGC 87596 Query 517797 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAA 517856 || | || | || ||||| ||||| || | || | | | | |||| | Sbjct 87595 GGAAGAGATCGGCGCAGAGTTCCTCGAAACGGGCACGGGTGATGGAGGTGTAGAAATCGA 87536 Query 517857 TTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTT 517916 |||| ||| |||| ||||||| || || | | || || || || || || | ||| | Sbjct 87535 TTCCCTCGTACAACGAATCAATCTCGATGCTGGCCTGGGTGGAGGACGACAGGGTACGCT 87476 Query 517917 TAGCACGTTCACATGCTGT 517935 | |||||||| || || || Sbjct 87475 TGGCACGTTCGCAGGCCGT 87457 >seq9994 Length=6265506 Score = 123 bits (136), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 870791 AAGAAAA---TTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGA 870847 ||||||| | ||||| |||| |||| ||| || ||||| || ||||||||| | ||| Sbjct 975687 AAGAAAAGAGTAATTGTAGATTTTTCTAGTCCTAACATTGCCAAGGAAATGCATGTCGGA 975746 Query 870848 CATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACAC 870907 || |||||||| || || ||||| || ||| | ||| | |||||| | ||||| Sbjct 975747 CACTTAAGATCTACGATAATTGGAGACAGTATCTCAAGGTTGTTAGAATACTTAGGACAT 975806 Query 870908 GATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCT 870967 ||||| | | |||||||||| ||||||||||| || ||||| |||||||| || || Sbjct 975807 GATGTATTGAGACTTAATCATGTAGGTGATTGGGGTACACAATTTGGTATGTTGATAGCA 975866 Query 870968 TATATTAAAAATAA 870981 || || || |||| Sbjct 975867 CATCTTCAAGATAA 975880 >seq10535 Length=209863 Score = 114 bits (126), Expect = 1e-19 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 ||| |||| | |||||| | ||||| |||| ||||| |||||||| |||||||| | Sbjct 206655 TTTATCTTCTTGTTTATCCATTCCATAAGCAAGTGCAGCTGCAGTTGGCTCATTAATTAC 206714 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 | | ||||| | || ||||| || ||||| || || ||||||| ||||||||| Sbjct 206715 ACGAAGCACATTCAATCCTGCAATCTGACCAGCATCCTTTGTCGCTTGTCGTTGTGAATC 206774 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCT 518334 |||||||| || || ||||||||||| |||| ||||| || | |||||| Sbjct 206775 ATTAAAATACGCTGGTACAGTAATAACAGCATTCTTTACTGGAGTATTTAAATAAGCTGC 206834 Query 518335 TGCCGTTTGTTTCATTTT 518352 || |||| ||||||||| Sbjct 206835 AGCAGTTTCTTTCATTTT 206852 Score = 104 bits (114), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 || || ||||| || ||||||||||| |||||||||| ||| |||| || || ||| Sbjct 206677 CCATAAGCAAGTGCAGCTGCAGTTGGCTCATTAATTACACGAAGCACATTCAATCCTGCA 206736 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 || | | ||| ||| || ||||||| |||| ||||||||||| |||||||||||| Sbjct 206737 ATCTGACCAGCATCCTTTGTCGCTTGTCGTTGTGAATCATTAAAATACGCTGGTACAGTA 206796 Query 322364 ATAACTGCTTTATTAATAGGTTTTTGTAAATA 322395 ||||| || || || | || | | |||||| Sbjct 206797 ATAACAGCATTCTTTACTGGAGTATTTAAATA 206828 >seq11804 Length=2961632 Score = 93.3 bits (102), Expect = 3e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 668847 GATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGT 668906 |||| | || ||||| ||| | ||| | || ||||||||||| |||||||| || | | Sbjct 1774985 GATTGAAGGGAAAAGAGGGTAGAATTCGTGGGAATTTGATGGGTAAACGTGTGGACTTCT 1774926 Query 668907 CTGCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTC 668966 |||||||||| ||||| ||| ||||||||||| | | | || |||| || || || | Sbjct 1774925 CTGCACGTACTGTTATCACTCCTGATCCCAATTTACGTATTGATCAAGTAGGCGTACCGC 1774866 Query 668967 TTATTATTGCTAAAAATCTTACTTTTGACGAAATTGTAACA 669007 | ||| || ||||||| || || || ||||| ||| Sbjct 1774865 GCAGTATAGCCCAAAATCTGACATTCCCTGAGATTGTGACA 1774825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780059243361574