Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq10556 403 2e-107 seq10440 260 2e-64 >seq10556 Length=418102 Score = 403 bits (446), Expect = 2e-107 Identities = 884/1311 (67%), Gaps = 20/1311 (2%) Strand=Plus/Minus Query 6497 TCGACCGTTCCTTTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTT 6555 ||||| || | |||||| |||| | ||||| ||||||||| ||||| ||| | | Sbjct 88325 TCGACTGTGCTTTTCATATTGA-AGCAGTAAGATTCGAGACCGTTCTTGGCCGAAATTGT 88267 Query 6556 TTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAAT 6615 || | | ||| || |||||| || || || || || | ||||| ||||||| Sbjct 88266 TTCCTTCTGCTTCTCGTCTTCACTGCGGTATTTCTCTGCCTCGTTCACCATTCTTTCAAT 88207 Query 6616 GTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGA 6675 || || || | || || || || || || || || ||||| | || || | Sbjct 88206 ATCCTCCTTGCTGAGTCGACCTTTGTCGTTGGTGATAGTGATCTTGTTCTCCTTGCCAGT 88147 Query 6676 GGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATT 6735 | ||| || ||||| ||||| | ||||| || ||||| | |||||| | || | Sbjct 88146 AGACTTGTCCACAGCAGAGACATTGAGGATACCGTTCGCATCGATGTCGAACGTCACTTC 88087 Query 6736 AATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAA 6795 ||| || || || | ||||| | ||||||||| | | || ||| |||| |||| Sbjct 88086 AATCTGAGGAACTCCACGGGGTGCTGGTGGAATACCGCTAAGTTCGAATTTACCCAGTAG 88027 Query 6796 ACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTG 6855 | | |||||| | | | | || ||||| ||||| |||| ||| ||| ||||||| Sbjct 88026 ATTATTATCCTTGGTCATGGCGCGCTCACCCTCATATACTTGAATCAACACACCAGGTTG 87967 Query 6856 ATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGG 6915 ||| || |||| ||| |||| | ||| | || || || ||||||||| Sbjct 87966 ATTGTCGGCGTAAGTTGTAAAGGTTTGAGTCTGCTTCGTCGGGATGGTGGTATTTCTCTT 87907 Query 6916 AATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTC 6975 ||||| || |||||| | ||| || ||| |||| || ||||| || || || ||||| Sbjct 87906 AATAAGCGCGGTCATGACACCGCCGGCAGTCTCGATACCCAGAGAGAGCGGAGTGACGTC 87847 Query 6976 CAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGAC 7035 | || | || |||||| || |||| ||||| ||||| || || || || Sbjct 87846 AAGTAGAAGCAAGTCTTGCACCTCTTCGGATTTATCACCGTGCAAGATAGCTGCCTGTAC 87787 Query 7036 CGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTT 7095 | ||| || || ||||| ||||| ||||| || || | ||| || || ||||| ||||| Sbjct 87786 AGCCGCGCCATAAGCGACAGCCTCGTCGGGATTGATAGATTTGTTGAGCTCTTTGCCGTT 87727 Query 7096 AAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAAC 7155 || | ||| || | | |||||| || |||||||| || || || |||||||| || Sbjct 87726 GAAGAAGTCCTGTAGGAGCTTTTGAATCTTGGGGATTCGCGTAGAGCCTCCGACCAAGAC 87667 Query 7156 GATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTC 7215 ||| || | | || | ||| || ||||| | ||| || | | ||| || |||||||| Sbjct 87666 GATATCGTGGATTTGAGCTTTGTCCATCTTGGCGTCGCGCAACGATTTCTCAACAGGTTC 87607 Query 7216 CATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGT 7275 | | ||||| | || || |||||||| ||||| |||||||| ||||| || Sbjct 87606 AAGAGTACCGCGGAAGAGATCGGCGCAGAGTTCCTCGAAACGGGCACGGGTGATGGAGGT 87547 Query 7276 ATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA 7335 |||||||| | || ||||| ||||||||||| || ||| | | || | | || || Sbjct 87546 GTAGAAATCGATTCCCTCGTACAACGAATCAATCTCGATGCTGGCCTGGGTGGAGGACGA 87487 Query 7336 TAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACC 7395 | || ||||| || || || || ||||| || | ||||||||| ||||| ||| Sbjct 87486 CAGGGTACGCTTGGCACGTTCGCAGGCCGTGCGCAGACGACGAAGAGCACGTTTGTTCGA 87427 Query 7396 GGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCT 7452 || | ||| ||||| | || || || || || | |||||| | || | | | | Sbjct 87426 GGTCAAATCCTTCTTGTACTTGCGCTTGAATTCCTGCACGAAGTGATTGACCATGCGGTT 87367 Query 7453 CGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGAT 7512 ||||| || |||||||| | || || || || || || | ||||| || ||||| Sbjct 87366 ---GTCGAAGTCCTCACCACCGAGATGAGTGTCACCAGCCGTGGACTTGACCTCGAAGAT 87310 Query 7513 ACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAG 7572 ||| | || || | | | || || || || || |||||||| || ||||| || || Sbjct 87309 ACCATCCTCGATAGTCAGGATGGACACGTCGAAAGTGCCACCACCGAGATCAAAGATTAG 87250 Query 7573 TACGTTCGTATCG-TCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCG 7628 ||||| ||| ||| | || ||||| ||||| |||||||| || || || || | Sbjct 87249 GACGTT----TCGCTCGCCGGTGGCCTTCTTGTCGAGGCCGTACGCAATCGCGGCGGCGG 87194 Query 7629 TTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTC 7687 | || || || |||||||| || || ||||| ||| | || || | || || || || Sbjct 87193 TGGGCTCGTTGATAATACGCAATAC-GTTCAAGCCCGAGATGGTACCAGCGTCCTTGGTT 87135 Query 7688 GCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTC 7747 || || || ||||| ||||| ||||| || ||||| || | || |||| |||||| || Sbjct 87134 GCCTGACGCTGCGAGTCGTTGAAGTAAGCGGGGACGGTGATCACAGCGTTCGTGACAGTC 87075 Query 7748 TTACCGAGATACGATTCCGCGATATCTTTCATTTTG-GTAAGAACCATCGA 7797 || || | || | || ||| | || ||||||||| |||| |||||||| Sbjct 87074 TTGCCTAAGTATGCCTCTGCGGTCTCCTTCATTTTGACTAAG-ACCATCGA 87025 Score = 105 bits (116), Expect = 8e-18 Identities = 138/188 (73%), Gaps = 5/188 (3%) Strand=Plus/Minus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 |||| ||||| |||||||||||||| |||||| || || ||||| ||||| ||||| Sbjct 85676 AAAATGGTGTTGTTGGGGTTCATGGCGACTTGGTTTTTGGCGGCGTCTCCGATGAGACGC 85617 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGC 8076 || ||||||| || || || || | |||| ||||| || || || || ||||| || Sbjct 85616 TC---GGTTTCCGTGAAGGCCACATA-GCTGGGCGTCGTGCGGTTGCCCTGATCGTTGGC 85561 Query 8077 AATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATC 8136 || || || || | ||| ||| | ||||| ||||| || || ||||| || | ||| Sbjct 85560 GATGATCTCGACCTTGCCGTGTTGGAAAACGCCAACGCAGGAGTAAGTTGTGCCAAGATC 85501 Query 8137 AATACCGA 8144 ||||||| Sbjct 85500 GATACCGA 85493 Score = 104 bits (114), Expect = 3e-17 Identities = 166/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||||||||| ||||| || ||||| || || || ||||||||| | ||| Sbjct 133052 ATCGAAATCTTCACCTCCCAAATGAGTATCACCATTAGTGGCAACGACTTCAAATACACC 132993 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || || | | ||| || ||||| || || || ||||||||||| | ||||| Sbjct 132992 GTTGTCGATAGTGAGCAAACTGACGTCAAAGGTGCCGCCGCCCAGGTCAAACACCAGTAC 132933 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| | ||| ||||| ||||| || | |||||| || || || ||||| || || || Sbjct 132932 GTTTTTCTCGCCGTCT---TTCTTGTCTAAACCGTATGCAATTGCAGCCGCAGTCGGCTC 132876 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || ||||| | | | || ||||| ||| ||| | ||||| || || || ||| Sbjct 132875 GTTGATAATTCTCATTACGACCAAGCCAGAAATTGTTCCAGCATCCTTGGTGGCCTGT 132818 Score = 82.4 bits (90), Expect = 1e-10 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 |||| ||| | ||| || ||||| ||||| || || || ||||| | |||||||||||| Sbjct 132620 TGTCTTTGTGCATCATTGAAGTAAGCCGGCACAGTAACTACCGCATGAGTGACTTTCTTA 132561 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 |||||||| | || || | |||||||| ||| | |||||| | || || || || Sbjct 132560 CCGAGATAGGCCTCGGCAGTTTCTTTCATCTTGCCTAAAACCATAGCAGAGATTTCCTCG 132501 Query 7811 GCCGCAAA 7818 | |||||| Sbjct 132500 GGCGCAAA 132493 >seq10440 Length=2225863 Score = 260 bits (288), Expect = 2e-64 Identities = 730/1111 (66%), Gaps = 12/1111 (1%) Strand=Plus/Plus Query 6705 TACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTG 6764 ||||||| || || | ||| || | || | ||||| || ||| | || || | | Sbjct 2122287 TACCATTAGCGTCGATATCAAAAGTGACTTCGATTTGCGGAACACCTCGAGGCGCTGGAG 2122346 Query 6765 GAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCAC 6824 |||||||||| | |||||| | || || | | |||||| ||| | || | || | Sbjct 2122347 GAATACCCGTCAGCTCAAATTTGCCGAGGATGTTATTATCCTTCGTCATCGCTCTCTCTC 2122406 Query 6825 CTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGT- 6883 | || ||||| | || ||| | |||||||| || ||| | ||| | || Sbjct 2122407 CCTCGTAGACCTGTATAAGCACTCCCGGTTGATTGTCGGAGTACGTGGTGAACGTCTGGG 2122466 Query 6884 TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATA 6943 ||| | || | ||| |||||||| || ||| ||| | | ||||||| || || Sbjct 2122467 TCTGT-TTCGTTGGTATCGTCGTGTTCCTCTTAATCAAGGTAGTCATAACGCCGCCAGCG 2122525 Query 6944 GTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCG 7003 ||||| | || | |||| || |||||||||| || | || ||||| || ||| Sbjct 2122526 GTTTCAATACCCAATGACAACGGAGTCACGTCCAGTAGAAGTAGATCTTGGACTTCCTCG 2122585 Query 7004 TTCCCTTCACCCGTTAAGA-TGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATC 7062 | || || || ||| |||| || || || | ||| || || || || ||||| || Sbjct 2122586 GACTTGTCGCC-GTGCAGAATGGCCGCCTGAACTGCCGCACCATAAGCAACGGCCTCGTC 2122644 Query 7063 GGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAAT 7122 || || || | |||||||||||| || |||||||| |||| | | | ||||| Sbjct 2122645 CGGATTGATGGATTTATTCAGTTCCTTGCCGTTAAAGAAATCTTGAAGTAGCTTCTGAAT 2122704 Query 7123 TTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGAT 7182 ||| || || | || || |||||||| | |||||| | |||| | |||||| || Sbjct 2122705 TTTTGGTATCCTGGTGGAGCCACCGACTAGAACGATGCTGTGAACTTGGGCTTTATCCAT 2122764 Query 7183 CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACA 7242 ||| | ||||| ||| | ||||| || ||||| | | | | |||| || || Sbjct 2122765 CTTCGCGTCTCTAAGCGCCTTTTCCACGGGTTCAAGAGTGCTTCTAAACAGATCGGCGCA 2122824 Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 || ||||| || | || | || | || |||||||| |||| ||| || | || || Sbjct 2122825 GAGCTCCTCGAATCTGGCTCTAGTTACCGACGTATAGAAGTCAATGCCCTCAAACAATGA 2122884 Query 7303 ATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT---AACGTTCGCTTTGCGCGCTCACA 7359 ||| ||||| ||| | | || ||| || || || |||| ||| || | ||| || Sbjct 2122885 ATCGATTTCGATGCTCGCCTG---CGTTGATGAGCTCAATGTTCTCTTCGCTCTCTCGCA 2122941 Query 7360 CGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACG 7419 || || | | ||| | || || | | ||| | | | ||||||||| | ||| | Sbjct 2122942 AGCAGTCCTCAGACGTCTCAGAGCTCTCTTGTTGCTGCTCAGATCTTTCTTGTATTTCCT 2123001 Query 7420 TTTAAACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGT 7478 ||||| |||| || | ||||| | | || || || || || ||||| | | Sbjct 2123002 CTTAAATTCTTGCACA-AAGTGGTTCACCATTCGGTTGTCAAAGTCCTCGCCACCGAGAT 2123060 Query 7479 GTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAA 7538 | || || || || || | ||| || ||||||||||| | || || | | | ||| | Sbjct 2123061 GCGTGTCGCCGGCCGTGGATTTTACCTCAAAGATACCATCCTCGATCGTCAGAATCGACA 2123120 Query 7539 CATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCT 7598 | ||||| ||||| ||||||| ||| || || | |||||| | || | | |||| Sbjct 2123121 CGTCAAAGGTACCGCCACCCAAGTCGAAGATCAAAACGTTCTTTTCACCTGCAGCCTTCT 2123180 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | |||||||| ||||| || || || || || || || || || || | ||| ||||| Sbjct 2123181 TGTCGAGACCATACGCTATCGCGGCGGCTGTGGGCTCGTTTATTATTCTGAGAACGTTCA 2123240 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 |||||||||||| | ||||| || || ||||| | || || || || || || |||| Sbjct 2123241 GGCCAGCAATAGCGCCGGCATCCTTTGTTGCTTGCCTCTGAGAGTCATTGAAATAAGCCG 2123300 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778 | || || | ||| || | || | |||| || || |||| ||||| | || |||| Sbjct 2123301 GCACAGTGATGACGGCATTTGTAATAGTCTTGCCCAGGTACGCCTCCGCAGTCTCCTTCA 2123360 Query 7779 TTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 | || || | |||||||| || | ||| || Sbjct 2123361 TCTTCGTCAAGACCATCGAGGACACCTCCTC 2123391 Score = 93.3 bits (102), Expect = 5e-14 Identities = 85/106 (80%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 22431 AAAAACGTGTAAA-TTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAA 22489 ||||| |||||| |||||||| || || ||||| || || ||||| ||||||| ||| Sbjct 824583 AAAAATCTGTAAAATTTTATCATGCGTCAACATCTGAACTTTACGGCAAAGTAATGGAAG 824642 Query 22490 CTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGG 22535 |||||||| |||||| ||||| ||||| || ||||| || ||||| Sbjct 824643 TTCCACAAACTGAAAAGACACCATTTTATCCACGTTCTCCCTATGG 824688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635010703658360