Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq10556 403 2e-107
seq10440 260 2e-64
>seq10556
Length=418102
Score = 403 bits (446), Expect = 2e-107
Identities = 884/1311 (67%), Gaps = 20/1311 (2%)
Strand=Plus/Minus
Query 6497 TCGACCGTTCCTTTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTT 6555
||||| || | |||||| |||| | ||||| ||||||||| ||||| ||| | |
Sbjct 88325 TCGACTGTGCTTTTCATATTGA-AGCAGTAAGATTCGAGACCGTTCTTGGCCGAAATTGT 88267
Query 6556 TTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAAT 6615
|| | | ||| || |||||| || || || || || | ||||| |||||||
Sbjct 88266 TTCCTTCTGCTTCTCGTCTTCACTGCGGTATTTCTCTGCCTCGTTCACCATTCTTTCAAT 88207
Query 6616 GTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGA 6675
|| || || | || || || || || || || || ||||| | || || |
Sbjct 88206 ATCCTCCTTGCTGAGTCGACCTTTGTCGTTGGTGATAGTGATCTTGTTCTCCTTGCCAGT 88147
Query 6676 GGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATT 6735
| ||| || ||||| ||||| | ||||| || ||||| | |||||| | || |
Sbjct 88146 AGACTTGTCCACAGCAGAGACATTGAGGATACCGTTCGCATCGATGTCGAACGTCACTTC 88087
Query 6736 AATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAA 6795
||| || || || | ||||| | ||||||||| | | || ||| |||| ||||
Sbjct 88086 AATCTGAGGAACTCCACGGGGTGCTGGTGGAATACCGCTAAGTTCGAATTTACCCAGTAG 88027
Query 6796 ACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTG 6855
| | |||||| | | | | || ||||| ||||| |||| ||| ||| |||||||
Sbjct 88026 ATTATTATCCTTGGTCATGGCGCGCTCACCCTCATATACTTGAATCAACACACCAGGTTG 87967
Query 6856 ATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGG 6915
||| || |||| ||| |||| | ||| | || || || |||||||||
Sbjct 87966 ATTGTCGGCGTAAGTTGTAAAGGTTTGAGTCTGCTTCGTCGGGATGGTGGTATTTCTCTT 87907
Query 6916 AATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTC 6975
||||| || |||||| | ||| || ||| |||| || ||||| || || || |||||
Sbjct 87906 AATAAGCGCGGTCATGACACCGCCGGCAGTCTCGATACCCAGAGAGAGCGGAGTGACGTC 87847
Query 6976 CAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGAC 7035
| || | || |||||| || |||| ||||| ||||| || || || ||
Sbjct 87846 AAGTAGAAGCAAGTCTTGCACCTCTTCGGATTTATCACCGTGCAAGATAGCTGCCTGTAC 87787
Query 7036 CGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTT 7095
| ||| || || ||||| ||||| ||||| || || | ||| || || ||||| |||||
Sbjct 87786 AGCCGCGCCATAAGCGACAGCCTCGTCGGGATTGATAGATTTGTTGAGCTCTTTGCCGTT 87727
Query 7096 AAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAAC 7155
|| | ||| || | | |||||| || |||||||| || || || |||||||| ||
Sbjct 87726 GAAGAAGTCCTGTAGGAGCTTTTGAATCTTGGGGATTCGCGTAGAGCCTCCGACCAAGAC 87667
Query 7156 GATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTC 7215
||| || | | || | ||| || ||||| | ||| || | | ||| || ||||||||
Sbjct 87666 GATATCGTGGATTTGAGCTTTGTCCATCTTGGCGTCGCGCAACGATTTCTCAACAGGTTC 87607
Query 7216 CATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGT 7275
| | ||||| | || || |||||||| ||||| |||||||| ||||| ||
Sbjct 87606 AAGAGTACCGCGGAAGAGATCGGCGCAGAGTTCCTCGAAACGGGCACGGGTGATGGAGGT 87547
Query 7276 ATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA 7335
|||||||| | || ||||| ||||||||||| || ||| | | || | | || ||
Sbjct 87546 GTAGAAATCGATTCCCTCGTACAACGAATCAATCTCGATGCTGGCCTGGGTGGAGGACGA 87487
Query 7336 TAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACC 7395
| || ||||| || || || || ||||| || | ||||||||| ||||| |||
Sbjct 87486 CAGGGTACGCTTGGCACGTTCGCAGGCCGTGCGCAGACGACGAAGAGCACGTTTGTTCGA 87427
Query 7396 GGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCT 7452
|| | ||| ||||| | || || || || || | |||||| | || | | | |
Sbjct 87426 GGTCAAATCCTTCTTGTACTTGCGCTTGAATTCCTGCACGAAGTGATTGACCATGCGGTT 87367
Query 7453 CGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGAT 7512
||||| || |||||||| | || || || || || || | ||||| || |||||
Sbjct 87366 ---GTCGAAGTCCTCACCACCGAGATGAGTGTCACCAGCCGTGGACTTGACCTCGAAGAT 87310
Query 7513 ACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAG 7572
||| | || || | | | || || || || || |||||||| || ||||| || ||
Sbjct 87309 ACCATCCTCGATAGTCAGGATGGACACGTCGAAAGTGCCACCACCGAGATCAAAGATTAG 87250
Query 7573 TACGTTCGTATCG-TCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCG 7628
||||| ||| ||| | || ||||| ||||| |||||||| || || || || |
Sbjct 87249 GACGTT----TCGCTCGCCGGTGGCCTTCTTGTCGAGGCCGTACGCAATCGCGGCGGCGG 87194
Query 7629 TTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTC 7687
| || || || |||||||| || || ||||| ||| | || || | || || || ||
Sbjct 87193 TGGGCTCGTTGATAATACGCAATAC-GTTCAAGCCCGAGATGGTACCAGCGTCCTTGGTT 87135
Query 7688 GCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTC 7747
|| || || ||||| ||||| ||||| || ||||| || | || |||| |||||| ||
Sbjct 87134 GCCTGACGCTGCGAGTCGTTGAAGTAAGCGGGGACGGTGATCACAGCGTTCGTGACAGTC 87075
Query 7748 TTACCGAGATACGATTCCGCGATATCTTTCATTTTG-GTAAGAACCATCGA 7797
|| || | || | || ||| | || ||||||||| |||| ||||||||
Sbjct 87074 TTGCCTAAGTATGCCTCTGCGGTCTCCTTCATTTTGACTAAG-ACCATCGA 87025
Score = 105 bits (116), Expect = 8e-18
Identities = 138/188 (73%), Gaps = 5/188 (3%)
Strand=Plus/Minus
Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017
|||| ||||| |||||||||||||| |||||| || || ||||| ||||| |||||
Sbjct 85676 AAAATGGTGTTGTTGGGGTTCATGGCGACTTGGTTTTTGGCGGCGTCTCCGATGAGACGC 85617
Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGC 8076
|| ||||||| || || || || | |||| ||||| || || || || ||||| ||
Sbjct 85616 TC---GGTTTCCGTGAAGGCCACATA-GCTGGGCGTCGTGCGGTTGCCCTGATCGTTGGC 85561
Query 8077 AATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATC 8136
|| || || || | ||| ||| | ||||| ||||| || || ||||| || | |||
Sbjct 85560 GATGATCTCGACCTTGCCGTGTTGGAAAACGCCAACGCAGGAGTAAGTTGTGCCAAGATC 85501
Query 8137 AATACCGA 8144
|||||||
Sbjct 85500 GATACCGA 85493
Score = 104 bits (114), Expect = 3e-17
Identities = 166/238 (70%), Gaps = 3/238 (1%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||||||||||||||| ||||| || ||||| || || || ||||||||| | |||
Sbjct 133052 ATCGAAATCTTCACCTCCCAAATGAGTATCACCATTAGTGGCAACGACTTCAAATACACC 132993
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
|| || | | ||| || ||||| || || || ||||||||||| | |||||
Sbjct 132992 GTTGTCGATAGTGAGCAAACTGACGTCAAAGGTGCCGCCGCCCAGGTCAAACACCAGTAC 132933
Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635
||| | ||| ||||| ||||| || | |||||| || || || ||||| || || ||
Sbjct 132932 GTTTTTCTCGCCGTCT---TTCTTGTCTAAACCGTATGCAATTGCAGCCGCAGTCGGCTC 132876
Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693
|| ||||| | | | || ||||| ||| ||| | ||||| || || || |||
Sbjct 132875 GTTGATAATTCTCATTACGACCAAGCCAGAAATTGTTCCAGCATCCTTGGTGGCCTGT 132818
Score = 82.4 bits (90), Expect = 1e-10
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750
|||| ||| | ||| || ||||| ||||| || || || ||||| | ||||||||||||
Sbjct 132620 TGTCTTTGTGCATCATTGAAGTAAGCCGGCACAGTAACTACCGCATGAGTGACTTTCTTA 132561
Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810
|||||||| | || || | |||||||| ||| | |||||| | || || || ||
Sbjct 132560 CCGAGATAGGCCTCGGCAGTTTCTTTCATCTTGCCTAAAACCATAGCAGAGATTTCCTCG 132501
Query 7811 GCCGCAAA 7818
| ||||||
Sbjct 132500 GGCGCAAA 132493
>seq10440
Length=2225863
Score = 260 bits (288), Expect = 2e-64
Identities = 730/1111 (66%), Gaps = 12/1111 (1%)
Strand=Plus/Plus
Query 6705 TACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTG 6764
||||||| || || | ||| || | || | ||||| || ||| | || || | |
Sbjct 2122287 TACCATTAGCGTCGATATCAAAAGTGACTTCGATTTGCGGAACACCTCGAGGCGCTGGAG 2122346
Query 6765 GAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCAC 6824
|||||||||| | |||||| | || || | | |||||| ||| | || | || |
Sbjct 2122347 GAATACCCGTCAGCTCAAATTTGCCGAGGATGTTATTATCCTTCGTCATCGCTCTCTCTC 2122406
Query 6825 CTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGT- 6883
| || ||||| | || ||| | |||||||| || ||| | ||| | ||
Sbjct 2122407 CCTCGTAGACCTGTATAAGCACTCCCGGTTGATTGTCGGAGTACGTGGTGAACGTCTGGG 2122466
Query 6884 TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATA 6943
||| | || | ||| |||||||| || ||| ||| | | ||||||| || ||
Sbjct 2122467 TCTGT-TTCGTTGGTATCGTCGTGTTCCTCTTAATCAAGGTAGTCATAACGCCGCCAGCG 2122525
Query 6944 GTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCG 7003
||||| | || | |||| || |||||||||| || | || ||||| || |||
Sbjct 2122526 GTTTCAATACCCAATGACAACGGAGTCACGTCCAGTAGAAGTAGATCTTGGACTTCCTCG 2122585
Query 7004 TTCCCTTCACCCGTTAAGA-TGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATC 7062
| || || || ||| |||| || || || | ||| || || || || ||||| ||
Sbjct 2122586 GACTTGTCGCC-GTGCAGAATGGCCGCCTGAACTGCCGCACCATAAGCAACGGCCTCGTC 2122644
Query 7063 GGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAAT 7122
|| || || | |||||||||||| || |||||||| |||| | | | |||||
Sbjct 2122645 CGGATTGATGGATTTATTCAGTTCCTTGCCGTTAAAGAAATCTTGAAGTAGCTTCTGAAT 2122704
Query 7123 TTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGAT 7182
||| || || | || || |||||||| | |||||| | |||| | |||||| ||
Sbjct 2122705 TTTTGGTATCCTGGTGGAGCCACCGACTAGAACGATGCTGTGAACTTGGGCTTTATCCAT 2122764
Query 7183 CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACA 7242
||| | ||||| ||| | ||||| || ||||| | | | | |||| || ||
Sbjct 2122765 CTTCGCGTCTCTAAGCGCCTTTTCCACGGGTTCAAGAGTGCTTCTAAACAGATCGGCGCA 2122824
Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302
|| ||||| || | || | || | || |||||||| |||| ||| || | || ||
Sbjct 2122825 GAGCTCCTCGAATCTGGCTCTAGTTACCGACGTATAGAAGTCAATGCCCTCAAACAATGA 2122884
Query 7303 ATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT---AACGTTCGCTTTGCGCGCTCACA 7359
||| ||||| ||| | | || ||| || || || |||| ||| || | ||| ||
Sbjct 2122885 ATCGATTTCGATGCTCGCCTG---CGTTGATGAGCTCAATGTTCTCTTCGCTCTCTCGCA 2122941
Query 7360 CGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACG 7419
|| || | | ||| | || || | | ||| | | | ||||||||| | ||| |
Sbjct 2122942 AGCAGTCCTCAGACGTCTCAGAGCTCTCTTGTTGCTGCTCAGATCTTTCTTGTATTTCCT 2123001
Query 7420 TTTAAACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGT 7478
||||| |||| || | ||||| | | || || || || || ||||| | |
Sbjct 2123002 CTTAAATTCTTGCACA-AAGTGGTTCACCATTCGGTTGTCAAAGTCCTCGCCACCGAGAT 2123060
Query 7479 GTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAA 7538
| || || || || || | ||| || ||||||||||| | || || | | | ||| |
Sbjct 2123061 GCGTGTCGCCGGCCGTGGATTTTACCTCAAAGATACCATCCTCGATCGTCAGAATCGACA 2123120
Query 7539 CATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCT 7598
| ||||| ||||| ||||||| ||| || || | |||||| | || | | ||||
Sbjct 2123121 CGTCAAAGGTACCGCCACCCAAGTCGAAGATCAAAACGTTCTTTTCACCTGCAGCCTTCT 2123180
Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658
| |||||||| ||||| || || || || || || || || || || | ||| |||||
Sbjct 2123181 TGTCGAGACCATACGCTATCGCGGCGGCTGTGGGCTCGTTTATTATTCTGAGAACGTTCA 2123240
Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718
|||||||||||| | ||||| || || ||||| | || || || || || || ||||
Sbjct 2123241 GGCCAGCAATAGCGCCGGCATCCTTTGTTGCTTGCCTCTGAGAGTCATTGAAATAAGCCG 2123300
Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778
| || || | ||| || | || | |||| || || |||| ||||| | || ||||
Sbjct 2123301 GCACAGTGATGACGGCATTTGTAATAGTCTTGCCCAGGTACGCCTCCGCAGTCTCCTTCA 2123360
Query 7779 TTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
| || || | |||||||| || | ||| ||
Sbjct 2123361 TCTTCGTCAAGACCATCGAGGACACCTCCTC 2123391
Score = 93.3 bits (102), Expect = 5e-14
Identities = 85/106 (80%), Gaps = 1/106 (1%)
Strand=Plus/Plus
Query 22431 AAAAACGTGTAAA-TTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAA 22489
||||| |||||| |||||||| || || ||||| || || ||||| ||||||| |||
Sbjct 824583 AAAAATCTGTAAAATTTTATCATGCGTCAACATCTGAACTTTACGGCAAAGTAATGGAAG 824642
Query 22490 CTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGG 22535
|||||||| |||||| ||||| ||||| || ||||| || |||||
Sbjct 824643 TTCCACAAACTGAAAAGACACCATTTTATCCACGTTCTCCCTATGG 824688
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635010703658360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |