Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq10371 82.4 9e-11 >seq10371 Length=124667 Score = 82.4 bits (90), Expect = 9e-11 Identities = 224/338 (66%), Gaps = 4/338 (1%) Strand=Plus/Plus Query 106303 ACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCT 106362 ||||||||||||||||| |||||| || || || | |||||||| || Sbjct 63139 ACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTCGATAGGATAAAAGTTAAC 63198 Query 106363 GTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA 106422 ||| |||||| | |||||| ||||| || || | || | | |||||| ||| | Sbjct 63199 GTCGATGACTTTATCTAGATTACGAGTAACGATTTTCGCGACTGTTTTAAGTTTATCAAA 63258 Query 106423 ATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 106482 ||| ||||| || ||| ||| ||| || | | ||||| ||||| ||||| || Sbjct 63259 ATCGAAAGTTTTCGTGTCTGTATTAACAAACATGTTGACAGCGATAGATGCTAAATTACA 63318 Query 106483 AACAGCCGTCTCATCC-TTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCT 106541 |||| || || ||| | | | ||| || | |||||| || ||||||||| | | Sbjct 63319 CACAG-CGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCACAAGTTGCTGCATT 63377 Query 106542 TAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG-TTGCACGCATCCTTGTAGAGCATG 106600 | || || || | || || || || | |||| | ||||| ||| || || ||||| Sbjct 63378 TGATAGTGCCTATATGCTGATGATT-CGATTTTCGATTGCAATGATCTTTATAAAGCATA 63436 Query 106601 TAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGC 106638 || || || || || || || ||| ||||||| || Sbjct 63437 TAAGGTGTTCCGGTTTCTACTTGAGACCTGAGAATGGC 63474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589867383565960