Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq15109 116 4e-21 >seq15109 Length=3572570 Score = 116 bits (128), Expect = 4e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 154863 CTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGA 154922 ||||| ||| | ||||| || || ||||| || |||| || || ||| | || || Sbjct 2013308 CTGTCGTGTCTGATGATCACGTATCCATCGACGAATGGAGTGTTCGAAGAAACGATCAGT 2013367 Query 154923 CAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTA 154982 | ||||| || || || || || ||||||||||||||| | || || || ||| | Sbjct 2013368 GATATATGCAACATGGTGCACAACGTTGGTGGTCAGGTATACTTGGACGGTGCCAATATG 2013427 Query 154983 AATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAAC 155042 ||||| || || || | ||| |||| |||||| || || | ||||| || Sbjct 2013428 AATGCTCAAGTTGGCTTGTGTCGACCCGGTGATTATGGTAGCGACGTGTCGCATCTCAAT 2013487 Query 155043 TTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGT 155102 |||||||||| || |||||||| ||||||||||| || ||||| | |||||||| || Sbjct 2013488 CTACATAAAACGTTTTGTATTCCTCATGGAGGTGGCGGACCTGGTATGGGTCCTATCGGA 2013547 Query 155103 GT 155104 || Sbjct 2013548 GT 2013549 Score = 109 bits (120), Expect = 6e-19 Identities = 209/304 (69%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||| ||| |||| | ||| | ||||| | ||| | |||||||| || |||||| Sbjct 2012027 GATATATGTGTTGGTACGAGCCAACGTTTTGGGGTGCCTCTTGGATATGGTGGACCTCAT 2012086 Query 153807 GCTGCATTCTTTGCAA--CAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG 153864 |||| ||||||||| | ||||| | | || || | || |||||||| ||| Sbjct 2012087 GCTGGGTTCTTTGCATGCCGACAGAAATTGGTGCGATTAA--TGCCCGGCAGAATGATAG 2012144 Query 153865 GTCAGTCAGTAGATAGTGAA--GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGA 153922 || || | ||| | | | || | | || || | ||||| || || || | || Sbjct 2012145 GT--GTTACGAGAGATTTCAACGGACAGGACGCTTATCGTTTAGCCCTCCAAACGCGCGA 2012202 Query 153923 GCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGC 153982 ||| || ||||||||||| ||||| ||||| || || || || || || ||| |||| || Sbjct 2012203 GCAACACATCAGGAGAGATAAAGCCACCAGCAATATTTGTACCGCACAAGCATTGCTCGC 2012262 Query 153983 TAATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGCAAG 154042 ||||||||||| | | ||||| | |||||| || | | ||| ||| | ||| || || Sbjct 2012263 TAATATGTCTGCAATGTATGCGGTATATCACGGACCTCAAGGAATACGAGATATCGCGAG 2012322 Query 154043 AAGA 154046 ||| Sbjct 2012323 CAGA 2012326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579101453579360