Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq15109 125 8e-24 >seq15109 Length=3572570 Score = 125 bits (138), Expect = 8e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 159538 CTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGA 159597 ||||| ||| | ||||| || |||||||| || |||| || || ||| || ||||| Sbjct 2013308 CTGTCGTGTCTGATGATCACGTATCCATCGACGAATGGAGTGTTCGAAGAAACGATCAGT 2013367 Query 159598 CAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTA 159657 | ||||| || || || || | ||||||||||||||| | || ||||| ||| | Sbjct 2013368 GATATATGCAACATGGTGCACAACGTTGGTGGTCAGGTATACTTGGACGGTGCCAATATG 2013427 Query 159658 AATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAAC 159717 ||||| || || || | ||| |||| |||||| || || | ||||| || Sbjct 2013428 AATGCTCAAGTTGGCTTGTGTCGACCCGGTGATTATGGTAGCGACGTGTCGCATCTCAAT 2013487 Query 159718 TTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGT 159777 ||||||| || || |||||||| ||||||||||| || ||||| | |||||||| || Sbjct 2013488 CTACATAAAACGTTTTGTATTCCTCATGGAGGTGGCGGACCTGGTATGGGTCCTATCGGA 2013547 Query 159778 GT 159779 || Sbjct 2013548 GT 2013549 Score = 105 bits (116), Expect = 8e-18 Identities = 201/294 (68%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 158430 TGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATT 158489 ||| |||| | ||| | ||||| | ||| | ||||| || || |||||||||| || Sbjct 2012035 TGTTGGTACGAGCCAACGTTTTGGGGTGCCTCTTGGATATGGTGGACCTCATGCTGGGTT 2012094 Query 158490 CTTTGCAA--CAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCA 158547 ||||||| | ||||| | | || || | || |||||||| ||||| | Sbjct 2012095 CTTTGCATGCCGACAGAAATTGGTGCGATTAA--TGCCCGGCAGAATGATAGGTGTTACG 2012152 Query 158548 GTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATC 158607 |||| | | || | | || || | ||||| || || || | ||||| || ||| Sbjct 2012153 AGAGATTTCAACGGACAGGACGCTTATCGTTTAGCCCTCCAAACGCGCGAGCAACACATC 2012212 Query 158608 AGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCT 158667 || ||||| ||||| ||||| || || || || ||||||||| |||| |||||||||||| Sbjct 2012213 AGGAGAGATAAAGCCACCAGCAATATTTGTACCGCACAAGCATTGCTCGCTAATATGTCT 2012272 Query 158668 GGGTTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGCAAGAAGA 158721 | | ||||| | |||||| || | | ||| ||| | ||| || || ||| Sbjct 2012273 GCAATGTATGCGGTATATCACGGACCTCAAGGAATACGAGATATCGCGAGCAGA 2012326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587938154507440