Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq15293 113 3e-20 seq9764 107 1e-18 seq10177 98.7 6e-16 >seq15293 Length=768699 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | ||| ||| ||||| ||||| ||||| ||||| | || | || || Sbjct 126859 AACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTC 126918 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||||||||| || |||| || ||||| ||| | || | || |||||||| Sbjct 126919 AAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTG 126978 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || |||||| | | |||| || |||||||| || | || || ||||| Sbjct 126979 AATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTT 127038 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||| || || || |||||||| ||||| Sbjct 127039 TCCCGTCAGGGTTTTGACAAAGATTTGCAT 127068 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||||||||| || | || ||| |||||||||||||| || ||||| | || | Sbjct 125942 CTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTGCGGCCG 126001 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || ||||||||||||||||| || | || ||||| ||| | || | || || ||| Sbjct 126002 TCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTG 126061 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||| || ||| ||| | | |||| || || || || || | || || Sbjct 126062 TCCTGAATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCGACTTCCAGAGTGATT 126121 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || ||||| || || ||||| || |||||| Sbjct 126122 GTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCATA 126157 Score = 102 bits (112), Expect = 5e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | ||| ||| ||||| ||||| ||||| ||||| | || | || || Sbjct 126175 AACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTC 126234 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||||||||| || |||| || ||||| ||| | || | || || ||||| Sbjct 126235 AAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTG 126294 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || ||| ||| | | |||| || |||||||| || | || || ||||| Sbjct 126295 AATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTT 126354 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || || ||||| || |||||| Sbjct 126355 GCCGGTGAGCGTTTTGACAAAAATTTGCATA 126385 Score = 102 bits (112), Expect = 5e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | ||| ||| ||||| ||||| ||||| ||||| | || | || || Sbjct 126403 AACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTC 126462 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||||||||| || |||| || ||||| ||| | || | || || ||||| Sbjct 126463 AAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTG 126522 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || ||| ||| | | |||| || |||||||| || | || || ||||| Sbjct 126523 AATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTT 126582 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || || ||||| || |||||| Sbjct 126583 GCCGGTGAGCGTTTTGACAAAAATTTGCATA 126613 Score = 102 bits (112), Expect = 5e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | ||| ||| ||||| ||||| ||||| ||||| | || | || || Sbjct 126631 AACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTC 126690 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||||||||| || |||| || ||||| ||| | || | || || ||||| Sbjct 126691 AAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTG 126750 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || ||| ||| | | |||| || |||||||| || | || || ||||| Sbjct 126751 AATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTT 126810 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || || ||||| || |||||| Sbjct 126811 GCCGGTGAGCGTTTTGACAAAAATTTGCATA 126841 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | || |||||| ||||||||||| || || || | || | || || Sbjct 127087 AACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTCTTC 127146 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || |||||||| || || | || ||||| || | || | || |||||||| Sbjct 127147 AAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTG 127206 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || ||||||| | | |||| || |||||||| || | || || ||||| Sbjct 127207 AATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTT 127266 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||| || || || |||||||| ||||| Sbjct 127267 TCCCGTCAGGGTTTTGACAAAGATTTGCAT 127296 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 34750 CATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGT 34809 ||||||| || || | | | || | ||||| ||| |||||| ||||| || |||| Sbjct 125697 CATTTCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGT 125756 Query 34810 CCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTT 34869 | || | | ||| |||| ||||||||||| || || || || |||| ||| || || Sbjct 125757 CGGACAAAGTCCGTCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTGTTGATCGG 125816 Query 34870 GCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCT 34929 | || | || || || || ||| ||| ||| ||| | |||| ||| || | Sbjct 125817 GAGGAATGCCTTCTTTATCTTGAATTTTCGCTTTCACGTTCTCGATCGTGTCAGACGCTT 125876 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || | || || ||||| || ||||||||||| || || ||||||||| Sbjct 125877 CGACCTCCAATGTGATAGTTTTACCAGTGAGAGTCTTGACGAAAATCTGCATA 125929 >seq9764 Length=1320143 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | || ||||||||||| || |||||||||||| || ||||| | Sbjct 200331 TTCCTCCTCGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTG 200272 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | | | || |||| ||| || || || || || | ||||| || || | | Sbjct 200271 AGAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 200212 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||||| || ||| | |||| | ||| ||| |||| Sbjct 200211 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 200152 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| |||||||| || |||||||| ||||| ||||||||||| Sbjct 200151 CTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200103 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | || ||||| |||| |||| |||||| |||||||| || || | Sbjct 200559 TTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG 200500 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || ||| | || |||||||| || || || || || | ||||| || || | | Sbjct 200499 AGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 200440 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||||| || || | |||| | ||| ||| |||| Sbjct 200439 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAA 200380 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| |||||||| || |||||||| ||||||||||| ||||| Sbjct 200379 CTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCAT 200331 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 ||||||||||||| || |||||||||||| || ||||| || || | | | || Sbjct 200998 AAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGTCCTACCGTCT 200939 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 |||| ||| || || || || || | ||||| || || | || | || || ||||| Sbjct 200938 TCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCT 200879 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| || ||| | |||| | ||| ||| ||||| |||| ||| |||||| Sbjct 200878 TGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTT 200819 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || |||||||| ||||| ||||||||||| Sbjct 200818 TTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200787 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | || ||||| |||| |||| |||||| |||||||| || || | Sbjct 200103 TTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG 200044 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || ||| | || |||||||| || || || || || | ||||| || || | | Sbjct 200043 AGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 199984 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || || || ||||| ||| ||| | |||| | ||| ||| |||| Sbjct 199983 GAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAA 199924 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| |||||||| || |||||||| || || ||||||||||| Sbjct 199923 CTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 199875 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | || ||||| |||| |||| |||||| |||||||| || || | Sbjct 200787 TTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG 200728 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || ||| | || |||||||| || || || || || | ||||| || || | | Sbjct 200727 AGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 200668 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || || || ||||| ||| ||| | |||| | ||| ||| |||| Sbjct 200667 GAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAA 200608 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| |||||||| || |||||||| || || ||||||||||| Sbjct 200607 CTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 200559 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | || ||||| |||| |||| |||||| |||||||| || || | Sbjct 199875 TTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG 199816 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || ||| | || |||| ||| || || || || || | ||||| || || | | Sbjct 199815 AGAGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAG 199756 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || || || ||||| |||||| |||| | ||| || || | Sbjct 199755 GAATGCCTTCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCA 199696 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| |||||||| || || ||||| ||||||||||| ||||| Sbjct 199695 CCTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647 >seq10177 Length=3058365 Score = 98.7 bits (108), Expect = 6e-16 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||| ||||| || || || || || | ||| |||| ||||||||||| || || || | Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 2346172 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | ||||| || || ||| | || | || |||||||| ||||| ||||| || Sbjct 2346173 TGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGAC--ATT 2346230 Query 34912 CT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 || || | || ||||| || |||| ||| |||||||| |||||||| || ||||| Sbjct 2346231 CTCGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCAC 2346290 Query 34970 AAAGATCTGCAT 34981 || |||||||| Sbjct 2346291 GAAAATCTGCAT 2346302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324572753417112