Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq9873 107 2e-18
seq10371 102 9e-17
>seq9873
Length=3435365
Score = 107 bits (118), Expect = 2e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 19458 ATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATC 19517
|| ||||||||| |||||||||||||| || | || ||||||||||||||||| || ||
Sbjct 2561933 ATTTACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTTCCAGATGTC 2561874
Query 19518 ACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTCCAT 19577
| ||||||| |||||||| || ||||| | |||| | ||||| |||| || ||||
Sbjct 2561873 AGGATATTGAATAGGAAACATTACAAAACGATTTGGACCTTCTTGGAGAAGTGGCTCCAG 2561814
Query 19578 TT 19579
||
Sbjct 2561813 TT 2561812
>seq10371
Length=124667
Score = 102 bits (112), Expect = 9e-17
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 47310 AGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTT 47369
||||| ||||| ||||| |||||||||||| | ||| | | ||| ||||| |||
Sbjct 62577 AGATGTGGATTGACAATGACAAATTCTCCAGACAATACGCGCCTCACATAGATATTGCTT 62636
Query 47370 GTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATG 47429
||||||||||| || ||||| ||||| || ||||| || || || || || || |||||
Sbjct 62637 GTATATGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATA 62696
Query 47430 GATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTC 47489
| ||| | ||| | | |||||||| || | || |||| |
Sbjct 62697 GGTGCTATTAAAAGGGAATTTCTTATACCGTGTTCCGCGATCTTCGCTTTCAATTCACAC 62756
Query 47490 CAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539
|||||||| | ||||| ||| ||| ||||| | ||||||||| || ||
Sbjct 62757 CAATCCCATAAATCTGTTGGCTTAACGTTCCACATATCATATTGGAGGAT 62806
Score = 96.9 bits (106), Expect = 4e-15
Identities = 119/160 (74%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332
||| |||| || |||||||| | ||| || | ||||||||||||||||| || |||||
Sbjct 63936 CCAATATTTCTCTTAAGTTCCAAAAAATCAAAAATATCAGCATGCCATGGCTCCAAATAA 63995
Query 48333 ATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTA 48392
|| || | | ||||||| |||||| || |||||||| | ||| |||| | | ||||
Sbjct 63996 ATAGCAAACGCTCCTGGTCTTTTATTTCCACCTTGATCAACATAAATGGCTATTTCGTTA 64055
Query 48393 TA-AACTCTTAACATTGGGACAATACCATTTGATATACCA 48431
|| |||| |||| || | | || ||||| | | |||||
Sbjct 64056 TACAACT-TTAAAATGGAAATCATGCCATTCGTTGTACCA 64094
Score = 95.1 bits (104), Expect = 1e-14
Identities = 124/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 47049 CTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATA 47108
||||| || |||||||||| ||| | ||| | | || ||| |||||||||
Sbjct 62224 CTCCAGCCGAAGAAATGCATCGAAGTAAGTTTCTCAGTTGTCGGATCTCCTATATGAATA 62283
Query 47109 TTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACC 47168
|| ||||| || ||||||||||| || |||| ||| |||||||| || | ||| ||
Sbjct 62284 TTTAGAGACTGTGATTGATCAATAAAAGCTCCTCGATCGGCTGCCATTTCGAGAATTACT 62343
Query 47169 CTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220
|||||||||||||||| || | ||||||| | ||| | || || ||||
Sbjct 62344 TTTTGTGGTATCTCCCAGACAATCTTATAAAGCTCTTTCAAATCATCGGGGA 62395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562000741609560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |