Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9873 107 2e-18 seq10371 102 9e-17 >seq9873 Length=3435365 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 19458 ATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATC 19517 || ||||||||| |||||||||||||| || | || ||||||||||||||||| || || Sbjct 2561933 ATTTACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTTCCAGATGTC 2561874 Query 19518 ACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTCCAT 19577 | ||||||| |||||||| || ||||| | |||| | ||||| |||| || |||| Sbjct 2561873 AGGATATTGAATAGGAAACATTACAAAACGATTTGGACCTTCTTGGAGAAGTGGCTCCAG 2561814 Query 19578 TT 19579 || Sbjct 2561813 TT 2561812 >seq10371 Length=124667 Score = 102 bits (112), Expect = 9e-17 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 47310 AGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTT 47369 ||||| ||||| ||||| |||||||||||| | ||| | | ||| ||||| ||| Sbjct 62577 AGATGTGGATTGACAATGACAAATTCTCCAGACAATACGCGCCTCACATAGATATTGCTT 62636 Query 47370 GTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATG 47429 ||||||||||| || ||||| ||||| || ||||| || || || || || || ||||| Sbjct 62637 GTATATGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATA 62696 Query 47430 GATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTC 47489 | ||| | ||| | | |||||||| || | || |||| | Sbjct 62697 GGTGCTATTAAAAGGGAATTTCTTATACCGTGTTCCGCGATCTTCGCTTTCAATTCACAC 62756 Query 47490 CAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539 |||||||| | ||||| ||| ||| ||||| | ||||||||| || || Sbjct 62757 CAATCCCATAAATCTGTTGGCTTAACGTTCCACATATCATATTGGAGGAT 62806 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332 ||| |||| || |||||||| | ||| || | ||||||||||||||||| || ||||| Sbjct 63936 CCAATATTTCTCTTAAGTTCCAAAAAATCAAAAATATCAGCATGCCATGGCTCCAAATAA 63995 Query 48333 ATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTA 48392 || || | | ||||||| |||||| || |||||||| | ||| |||| | | |||| Sbjct 63996 ATAGCAAACGCTCCTGGTCTTTTATTTCCACCTTGATCAACATAAATGGCTATTTCGTTA 64055 Query 48393 TA-AACTCTTAACATTGGGACAATACCATTTGATATACCA 48431 || |||| |||| || | | || ||||| | | ||||| Sbjct 64056 TACAACT-TTAAAATGGAAATCATGCCATTCGTTGTACCA 64094 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 47049 CTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATA 47108 ||||| || |||||||||| ||| | ||| | | || ||| ||||||||| Sbjct 62224 CTCCAGCCGAAGAAATGCATCGAAGTAAGTTTCTCAGTTGTCGGATCTCCTATATGAATA 62283 Query 47109 TTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACC 47168 || ||||| || ||||||||||| || |||| ||| |||||||| || | ||| || Sbjct 62284 TTTAGAGACTGTGATTGATCAATAAAAGCTCCTCGATCGGCTGCCATTTCGAGAATTACT 62343 Query 47169 CTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 |||||||||||||||| || | ||||||| | ||| | || || |||| Sbjct 62344 TTTTGTGGTATCTCCCAGACAATCTTATAAAGCTCTTTCAAATCATCGGGGA 62395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562000741609560