Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq9873 82.4 9e-11 >seq9873 Length=3435365 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 ||||||||| || | |||||| ||||| | |||||||| | |||| ||||| Sbjct 2563139 CTTCATCTCGCGAGATAAGTTCATTGCTGAAGGTGAGACCTGGCATAATTCCTCGTTTTT 2563080 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||||||||| ||||||||| || |||||||||||||| || || ||||| | Sbjct 2563079 TCAGCCAAAATATAGCTGCAAAACTACCGCTGAAGAAAATACCTTCGACAGCCGCAAACG 2563020 Query 37318 CTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTG 37377 | || | |||| | || || | ||| | || | ||||| ||| || ||||| | Sbjct 2563019 CGACTACACGTTCAGGAAATGTAGCACTCTCATGATTGATCCAGTTTAATGCCCAATTAG 2562960 Query 37378 CCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAA-GAGAAAGTT 37426 | ||| | ||||| || ||| |||| || || || ||||| || Sbjct 2562959 CTTTTTTTCCCACACAAGGAAGTGTCTCAAGCGCATTAAATAAGAAATTT 2562910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592202934499160