Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq9764 118 8e-22 seq15293 116 3e-21 seq10177 107 1e-18 >seq9764 Length=1320143 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| ||| || ||| ||||||||||| |||||||| || || ||| | Sbjct 199864 AGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTA 199805 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||||||||||||| || || |||| || |||||||| | |||| ||| || Sbjct 199804 CCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCT 199745 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| ||| ||| | | || || || || |||||||| | || Sbjct 199744 TTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCTAAGGTG 199685 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | |||||| ||||| || ||||| Sbjct 199684 ATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| ||| || ||| ||||||||||| |||||||| || || ||| | Sbjct 200092 AGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTA 200033 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| || || || |||| || |||||||| | |||| ||| || Sbjct 200032 CCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCT 199973 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| ||| || | | | || || || || || || | || Sbjct 199972 TTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTG 199913 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | ||||||||| || |||||||| Sbjct 199912 ATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 199875 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| ||| || ||| ||||||||||| |||||||| || || ||| | Sbjct 200548 AGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTA 200489 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| || || || |||| || |||||||| | |||| ||| || Sbjct 200488 CCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCT 200429 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || || || || || | || Sbjct 200428 TTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACTTCGAGGGTG 200369 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | |||||| ||||| || ||||| Sbjct 200368 ATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCAT 200331 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| ||| || ||| ||||||||||| |||||||| || || ||| | Sbjct 200776 AGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTA 200717 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| || || || |||| || |||||||| | |||| ||| || Sbjct 200716 CCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCT 200657 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| ||| || | | | || || || || || || | || Sbjct 200656 TTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTG 200597 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | ||||||||| || |||||||| Sbjct 200596 ATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 200559 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || || ||||| ||||||||||| || || || | | | Sbjct 200320 AGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGTCCTA 200261 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || || || |||| || |||||||| | |||| ||| || Sbjct 200260 CCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCT 200201 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||||| | | | || || || || || || | || Sbjct 200200 TTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTG 200141 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | |||||| || || |||||||| Sbjct 200140 ATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200103 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || ||||| || || || ||||| ||||||||||| || || || | | | Sbjct 201004 AGACGTAAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGTCCTA 200945 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || || || |||| || |||||||| | |||| ||| || Sbjct 200944 CCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCT 200885 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||||| | | | || || || || || || | || Sbjct 200884 TTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTG 200825 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | |||||| || || |||||||| Sbjct 200824 ATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200787 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || || || || || ||| |||||||| || ||||||||||| ||| ||| Sbjct 201232 AGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTG 201173 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| ||||| || || || || | || |||||||| | || | ||||| Sbjct 201172 CCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGATTCCCTCT 201113 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||||| | | | ||||| || || || || | || Sbjct 201112 TTGTCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGGGTG 201053 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | |||||| || ||||| ||||| Sbjct 201052 ATGGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCAT 201015 >seq15293 Length=768699 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | |||||||||| || ||||||||||| || |||||||| Sbjct 127070 CCACCACGTAGACGAAGAACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAG 127129 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || |||| || | ||||| ||||| || |||| ||||| ||||| | || Sbjct 127130 AGAGTACGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGG 127189 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||| || ||| || | | | ||||| ||||| || Sbjct 127190 ATGCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAACT 127249 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| || ||||||||||||| ||||| ||||| || ||||| Sbjct 127250 TCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCAT 127296 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | |||||||||| || ||||||||||| || |||||||| Sbjct 127298 CCACCACGTAGACGAAGAACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGAG 127357 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| |||| || | ||||| ||||| || |||| ||||| ||||| | || Sbjct 127358 AGAGTACGACCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGG 127417 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| ||||| || |||||| |||||| | | | || || ||||| || Sbjct 127418 ATGCCTTCCTTATCTTGGATCTTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCGACT 127477 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| || || || || || ||||| || || || ||||||||||| ||| Sbjct 127478 TCCAGAGTTATGGTCTTCCCGGTCAACGTCTTCACGAAAATCTGCATGGTG 127528 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || || || || || ||||| ||||| || | || |||| || Sbjct 126860 ACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126919 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || ||||| || || | || ||| ||||| | || | || |||||||| | Sbjct 126920 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGA 126979 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || ||| ||| ||| | | | ||||| ||||| || |||| ||| || |||||| Sbjct 126980 ATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTT 127039 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| ||||| ||||| || ||||| Sbjct 127040 CCCGTCAGGGTTTTGACAAAGATTTGCAT 127068 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||||||||| || || | | | || | || |||| ||| || || || || Sbjct 125738 TCTTTTTGAATATTGTAGTCGGACAAAGTCCGTCCATCCTCCAGCTGTTTGCCCGCGAAA 125797 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||||| |||||||| | |||| ||| || || || ||| || ||| || Sbjct 125798 ATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAATTTTCGCTTTCACGTTC 125857 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || ||||| || ||||||| || || ||||| || || | ||| || || Sbjct 125858 TCGATCGTGTCAGACGCTTCGACCTCCAATGTGATAGTTTTACCAGTGAGAGTCTTGACG 125917 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 125918 AAAATCTGCAT 125928 >seq10177 Length=3058365 Score = 107 bits (118), Expect = 1e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 ||||||||||||||||||| || ||| | || | || |||| ||| || || || || | Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 2346172 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | |||||||||||||| | |||| || |||||||| ||||| || ||| Sbjct 2346173 TGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 2346232 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | || || ||||| ||||| | || || ||||| ||||| | ||||| || | Sbjct 2346233 CGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 2346292 Query 48757 AAATCTGCATCGTG 48770 |||||||||| ||| Sbjct 2346293 AAATCTGCATGGTG 2346306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380866200270417