Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq9764 114 1e-20 seq10177 91.5 1e-13 seq15293 89.7 4e-13 >seq9764 Length=1320143 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || ||||| | || ||||||||||| ||| |||| ||| |||| Sbjct 201014 AATGCAAATTTTCGTGAAAACTCTTACTGGTAAAACCATCACCCTCGAAGTCGAAGCTTC 201073 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | | ||| ||||| |||||||||||| | || |||||| Sbjct 201074 AGACACCATTGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATCCCTCCAGATCA 201133 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | ||||| || ||||| ||| ||||||| | |||| | | ||||| || Sbjct 201134 ACAACGTTTAATCTTCGCTGGCAAGCAACTGGAAGACGGCAGAACTCTTTCTGATTACAA 201193 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| ||||||||||| || || ||| | || ||| || | || ||||| Sbjct 201194 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 201241 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| | || || |||||||| ||| |||| ||| | || Sbjct 200330 AATGCAAATCTTTGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200389 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| || ||| |||||||| || | || ||||| Sbjct 200390 TGATACAATAGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200449 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | ||||| || ||||| || ||||||| || ||| | ||||||| || Sbjct 200450 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200509 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||||||| || || || |||| | | | |||||||| || Sbjct 200510 CATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGAAT 200560 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || |||||||| ||| || |||| |||| Sbjct 199647 ATGCAAATCTTTGTGAAAACTCTTACTGGGAAAACCATCACCTTAGAGGTGGAAGCTTCT 199706 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| || ||| || ||||| || | || |||||| Sbjct 199707 GATACTATAGAGAATGTCAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCAA 199766 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | ||||| || || || || |||||||| || ||| | ||||||| ||| Sbjct 199767 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCCGATTACAAC 199826 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||| || || || |||| | | | |||||||| || Sbjct 199827 ATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGAAT 199876 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || ||||| | || || |||||||| ||| |||| ||| | || Sbjct 200786 AATGCAGATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200845 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | ||| || ||| |||||||| || | || ||||| Sbjct 200846 TGACACAATAGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200905 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | ||||| || ||||| || |||||||| || || | | || || || Sbjct 200906 ACAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCAGACTACAA 200965 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||||||||||||| ||| |||| ||| | | |||||||| || Sbjct 200966 TATTCAGAAAGAATCTACTCTTCACTTGGTTTTACGTCTTCGAGGAGGAAT 201016 >seq10177 Length=3058365 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| | |||||||||||||| ||| ||| || |||| Sbjct 2346302 ATGCAGATTTTCGTGAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCTTCC 2346243 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| ||||| || ||| | || ||||||| Sbjct 2346242 GATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAA 2346183 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| |||| ||||| || |||||||| |||| ||| ||| || ||||||| || Sbjct 2346182 CAGCGACTCATCTTCGCTGGCAAACAGCTGGAGGATGGACGTACTCTGTCCGATTACAAT 2346123 Query 28734 ATTCAAAAAG 28743 |||||||||| Sbjct 2346122 ATTCAAAAAG 2346113 >seq15293 Length=768699 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||| | || || ||||| || || ||| ||| | || Sbjct 126156 ATGCAAATTTTTGTCAAAACACTCACCGGCAAAACAATCACTCTGGAAGTCGAAGCATCG 126097 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | | || || |||| || |||||||| ||| | || |||||| Sbjct 126096 GACACGATTGAAAACGTGAAAGCTAAAATTCAG-GACAAAGAAGGAATCCCTCCAGATCA 126038 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| | |||||||| || ||||| | ||||| || | | |||||||| Sbjct 126037 GCAGAGATTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACGCTTTCTGATTATAA 125978 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||| || |||||||| ||||| |||| || ||| | || || || || Sbjct 125977 CATTCAGAAGGAATCTACCCTGCATTTGGTTTTGAGACTTCGCGGTGGTAT 125927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425325065713641