Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_020205.1 Length=42963 Score E Sequences producing significant alignments: (Bits) Value seq7919 109 2e-19 >seq7919 Length=486 Score = 109 bits (120), Expect = 2e-19 Identities = 205/295 (69%), Gaps = 10/295 (3%) Strand=Plus/Plus Query 34842 CCAGCATCTTCATCTGATCGCAGGCGATGTCGGTGGTGTAGTGCGTCACGCCTTCCTTTT 34901 ||| ||||| ||||| |||| |||| ||||| ||||||||| | | || ||||||| Sbjct 56 CCAACATCTGCATCTCATCGGCAACGATATCGGTCGTGTAGTGCTTGATACCATCCTTTT 115 Query 34902 CGTACTTGCCGTAACGGATCATGCCCGCCACCGCGATCTTCGA-ACCCTTGCGCAAGTAT 34960 |||| ||||| ||| |||| | | || ||| | ||||||||||| |||| Sbjct 116 CGTAAGAACCGTATTCAATCCGGCCCTCGATATAGA-CTTGGCGACCCTTGCGCAGGTAT 174 Query 34961 TCGCCGGCAATCTCGGCCAGCTTCCCGAAGAACACCACCCGGTGCCACTGGGTTTCTTCG 35020 |||||||| || ||| ||| ||| || ||| | ||||||||||| | ||| | || Sbjct 175 TCGCCGGCGATATCGCCCAACTTGCCCCAGAGCTTGACCCGGTGCCATTCGGTCTTTT-- 232 Query 35021 ACCTGG---TTGCCCTCGCGGTCTTTCC-GCTTCGACGTGGTGGCGATGGAAATGCGGGT 35076 ||||| ||||| || || ||||||| | || || || || | | | | || Sbjct 233 -CCTGGGGATTGCCGTCACGATCTTTCCAGGCGCG-GGTAGTCGCCAAGCTTAAGGTGGC 290 Query 35077 GATGGCCATGCCGCCCTGCGTGTAAGTCACCTTCGGGTCATCCCCCAGGTTCCCG 35131 ||||| | ||||| || ||||| |||||| |||||| | || ||||| ||| Sbjct 291 GATGGTCTGTCCGCCTTGAGTGTACTTCACCTCCGGGTCGTTGCCGAGGTTGCCG 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137334914544150