Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq10371 86.0 7e-12 >seq10371 Length=124667 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561 ||||| || ||||| |||||||| ||||| || ||||| || || || ||||| |||| | Sbjct 62710 CTTTTAATAGCACCTATGCCAACGGCCTCGACGGCACAGATTTTAGGGAATAACGAATCC 62651 Query 76562 TTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATT 76621 |||||||||| |||| || ||||| |||| | | | || || ||||||||| Sbjct 62650 ATTGAACCATATACAAGCAATATCTATGTGAGGCGCGTATTGTCTGGAGAATTTGTCATT 62591 Query 76622 GTCAA 76626 ||||| Sbjct 62590 GTCAA 62586 Score = 86.0 bits (94), Expect = 7e-12 Identities = 225/338 (67%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 75884 GCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGT 75943 || ||||||| || || || || |||||||| ||||||||||| || ||| ||| Sbjct 63474 GCCATTCTCAGGTCTCAAGTAGAAACCGGAACACCTTATATGCTTTATAAAGATCATTGC 63415 Query 75944 AA-CAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGA 76002 || | | || | || || || || | || || ||||| || || | ||||| || Sbjct 63414 AATCGAAAATCG-AATCATCAGCATATAGGCACTATCAAATGCAGCAACTTGTGCACCGA 63356 Query 76003 AATTTTAGAGTACACAGATAA-GGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCC 76061 |||| | || ||| | | | ||| || || |||| || ||||| ||||| ||||| Sbjct 63355 AATTGTTGAATACTCCGGTCCTGGAGAAGTCG-CTGTGTGTAATTTAGCATCTATCGCTG 63297 Query 76062 TTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCA 76121 | | || ||| ||| ||| || ||||| |||| ||| |||||| | | || Sbjct 63296 TCAACATGTTTGTTAATACAGACACGAAAACTTTCGATTTTGATAAACTTAAAACAGTCG 63237 Query 76122 CAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGA 76181 | || || ||||| |||||| | |||||| ||| || |||||||| | || Sbjct 63236 CGAAAATCGTTACTCGTAATCTAGATAAAGTCATCGACGTTAACTTTTATCCTATCGAAG 63177 Query 76182 CTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGT 76219 || || |||||| ||||||||||||||||| Sbjct 63176 AAACGAAAACATCTAATCGTAGACACAGACCTATTGGT 63139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596454916951520