Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq15293 170 3e-37
seq9764 131 3e-25
>seq15293
Length=768699
Score = 170 bits (188), Expect = 3e-37
Identities = 180/237 (76%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||| | || || || |||| ||||||||||| || || || ||
Sbjct 126148 AATTTGCATACCACCACGTAAACGGAGAACCAAATGCAATGTAGATTCCTTCTGGATGTT 126207
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
||||| || | || | || || | ||||||||||| |||||||||||||| ||
Sbjct 126208 GTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTG 126267
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||| ||||| ||||||||||| ||||| ||||| | ||| | ||| ||| || |||||
Sbjct 126268 ATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGA 126327
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| ||||||||| ||||| || ||||| || || |||||||| ||||| ||||||||
Sbjct 126328 TGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384
Score = 167 bits (184), Expect = 4e-36
Identities = 179/237 (76%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||| | || || || |||| ||||||||| | || || || ||
Sbjct 126376 AATTTGCATACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTT 126435
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
||||| || | || | || || | ||||||||||| |||||||||||||| ||
Sbjct 126436 GTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTG 126495
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||| ||||| ||||||||||| ||||| ||||| | ||| | ||| ||| || |||||
Sbjct 126496 ATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGA 126555
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| ||||||||| ||||| || ||||| || || |||||||| ||||| ||||||||
Sbjct 126556 TGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612
Score = 167 bits (184), Expect = 4e-36
Identities = 179/237 (76%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||| | || || || |||| ||||||||| | || || || ||
Sbjct 126604 AATTTGCATACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTT 126663
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
||||| || | || | || || | ||||||||||| |||||||||||||| ||
Sbjct 126664 GTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTG 126723
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||| ||||| ||||||||||| ||||| ||||| | ||| | ||| ||| || |||||
Sbjct 126724 ATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGA 126783
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| ||||||||| ||||| || ||||| || || |||||||| ||||| ||||||||
Sbjct 126784 TGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840
Score = 154 bits (170), Expect = 3e-32
Identities = 177/238 (74%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||| | || || || |||| ||||||||| | || || || ||
Sbjct 126832 AATTTGCATACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTT 126891
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
||||| || | || | || || | ||||||||||| |||||||||||||| ||
Sbjct 126892 GTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTG 126951
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||| ||||| |||||||| || ||||| ||||| | ||| | |||| || ||||| ||
Sbjct 126952 ATCTGGAGGGATTCCTTCCTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTATCTGA 127011
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
| ||||||||| | || |||||||| || || || ||||| ||||| |||||||||
Sbjct 127012 TGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCATT 127069
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | | || | |||| ||||| |||| || || ||| ||||| ||
Sbjct 125927 ATACCACCGCGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCA 125986
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| | ||| | || || | |||||||||||||| || |||||||| ||||| |||
Sbjct 125987 GAAAGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGA 126046
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| ||||||||||| || || ||||| | ||| | ||| ||| || || || | ||
Sbjct 126047 GGGATTCCTTCTTTGTCCTGAATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCG 126106
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| ||||| || ||||| || || || ||||| ||||| ||||||||
Sbjct 126107 ACTTCCAGAGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156
Score = 125 bits (138), Expect = 1e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193
|| ||||| | ||||||||| || || | ||||| ||||| |||||| ||||||||
Sbjct 125702 CCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGAC 125761
Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253
|| || | ||| || | ||||| || || ||||| | ||| |||||||| |||||
Sbjct 125762 AAAGTCCGTCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGA 125821
Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313
|| |||||||||||||| ||||| | ||| | || || || || || | || ||
Sbjct 125822 ATGCCTTCTTTATCTTGAATTTTCGCTTTCACGTTCTCGATCGTGTCAGACGCTTCGACC 125881
Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| | || ||||||||||| || || || || || || || |||||
Sbjct 125882 TCCAATGTGATAGTTTTACCAGTGAGAGTCTTGACGAAAATCTGCAT 125928
>seq9764
Length=1320143
Score = 131 bits (144), Expect = 3e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || |||||||| | ||| | ||||| ||| || || ||||| | ||||||
Sbjct 199861 CGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCG 199802
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || || || || || || || || || | |||||||||||||| || |||||||||
Sbjct 199801 TCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTA 199742
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || |||| ||| | ||| |||||||| |||| || || |||| || ||
Sbjct 199741 TCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCTAAGGTGATG 199682
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| || || || ||||| ||||| ||||||||
Sbjct 199681 GTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647
Score = 123 bits (136), Expect = 4e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || |||||||| | ||| | ||||| ||| || || ||||| | ||||||
Sbjct 200089 CGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCG 200030
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | || || || || || || || | |||||||||||||| || |||||||||
Sbjct 200029 TCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTA 199970
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || |||| ||| | ||| || ||||| || | |||||||| || || ||
Sbjct 199969 TCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATG 199910
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
||||| || || || |||||||| || || ||||||
Sbjct 199909 GTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 199874
Score = 123 bits (136), Expect = 4e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || |||||||| | ||| | ||||| ||| || || ||||| | ||||||
Sbjct 200545 CGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCG 200486
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | || || || || || || || | |||||||||||||| || ||||||||
Sbjct 200485 TCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTG 200426
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || |||| || | |||| || ||||| || | |||||||| || || ||
Sbjct 200425 TCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACTTCGAGGGTGATG 200366
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
||||| || || || ||||| ||||| |||||||||
Sbjct 200365 GTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCATT 200330
Score = 123 bits (136), Expect = 4e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || |||||||| | ||| | ||||| ||| || || ||||| | ||||||
Sbjct 200773 CGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCG 200714
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | || || || || || || || | |||||||||||||| || |||||||||
Sbjct 200713 TCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTA 200654
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || |||| ||| | ||| || ||||| || | |||||||| || || ||
Sbjct 200653 TCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATG 200594
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
||||| || || || |||||||| || || ||||||
Sbjct 200593 GTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 200558
Score = 107 bits (118), Expect = 3e-18
Identities = 166/237 (70%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| || || |||| | || || |||| || | |||| ||||| ||||||
Sbjct 200338 ATTTGCATTCCTCCTCGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTG 200279
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||| || | || ||| || || || || || || || || || || | ||||||
Sbjct 200278 TAGTCTGAGAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGA 200219
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|||||||| || |||||||| ||||| || |||| |||| ||| || || || ||
Sbjct 200218 TCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAG 200159
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
| |||||||| || || || ||||| || || || ||||| || || || ||||||
Sbjct 200158 GCTTCAACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCATT 200102
Score = 105 bits (116), Expect = 1e-17
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223
|||| ||||| |||||| ||||| || | || ||| || || || || || ||
Sbjct 200983 GTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGTCCTACCGTCTTCCAACTGCTTGCCA 200924
Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283
|| || || || | |||||||||||||| || |||||||| ||||| || |||| |||
Sbjct 200923 GCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTT 200864
Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTT 193343
| ||| || || || || | |||||||| || || || ||||| || || || |||
Sbjct 200863 ACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTT 200804
Query 193344 TTTACAAATATTTGCATT 193361
|| || || || ||||||
Sbjct 200803 TTCACGAAGATCTGCATT 200786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899481452687280
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