Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq15293 125 1e-23 seq9764 125 1e-23 seq9873 93.3 6e-14 >seq15293 Length=768699 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | ||||| |||||||| ||||| || ||||||| ||| Sbjct 125928 ATGCAGATTTTCGTCAAGACTCTCACTGGTAAAACTATCACATTGGAGGTCGAAGCGTCT 125869 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||||||| ||||| ||||||||||||||||| ||||| || ||| Sbjct 125868 GACACGATCGAGAACGTGAAAGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAA 125809 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| |||||| || || || ||||| || ||| | ||||| || || || ||| Sbjct 125808 CAAAGACTGATTTTCGCGGGCAAACAGCTGGAGGATGGACGGACTTTGTCCGACTACAAT 125749 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || ||||| | || | || | |||||||| Sbjct 125748 ATTCAAAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGG 125702 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| |||| ||||||||||| || || ||||| || | || Sbjct 127069 AATGCAAATCTTTGTCAAAACCCTGACGGGAAAAACTATCACGTTGGAAGTTGAGGCATC 127010 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || ||| || ||| ||||| ||||| || ||||| || |||||||| || Sbjct 127009 AGATACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCA 126950 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || ||||| |||| ||||| || ||||| ||||| Sbjct 126949 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGA 126914 Score = 109 bits (120), Expect = 8e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| |||| ||||||||||| || || ||||| || | || Sbjct 127297 AATGCAAATCTTTGTCAAAACCCTGACGGGAAAAACTATCACGTTGGAAGTTGAGGCATC 127238 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || |||||| ||| ||||| || || || |||||||| || || || || Sbjct 127237 AGATACGATCGAAAACGTCAAAGCCAAAATTCAGGACAAGGAAGGCATCCCACCTGATCA 127178 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||| | ||||| ||||| || ||||| | | ||| | || |||||||| Sbjct 127177 GCAGCGTTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCCGTACTCTCTCTGATTATAA 127118 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| |||| | ||||| || Sbjct 127117 CATTCAAAAAGAATCGACCTTACATTTGGT 127088 >seq9764 Length=1320143 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||| ||||| || || ||||| || |||| |||| Sbjct 199647 ATGCAAATCTTTGTGAAAACTCTTACTGGGAAAACCATCACCTTAGAGGTGGAAGCTTCT 199706 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || ||||||||||||||||| ||||| || ||| Sbjct 199707 GATACTATAGAGAATGTCAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCAA 199766 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | || ||||||||| | ||||| ||||| | || ||||| || Sbjct 199767 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCCGATTACAAC 199826 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || ||||| | || |||||| Sbjct 199827 ATTCAAAAAGAATCCACACTTCAT 199850 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| | ||||| ||||| || || | ||||| |||| || Sbjct 199874 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 199933 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || |||||||||| || || ||||||||||||||||| ||||| || || Sbjct 199934 TGATACAATAGAAAACGTGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCA 199993 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | ||||| | || || |||||||| ||||| ||||| | || ||||| || Sbjct 199994 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200053 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 || ||||| | || |||||| Sbjct 200054 CATTCAAAAAGAATCCACACTTCAT 200078 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| | ||||| ||||| || || | ||||| |||| || Sbjct 200558 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 200617 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || |||||||||| || || ||||||||||||||||| ||||| || || Sbjct 200618 TGATACAATAGAAAACGTGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCA 200677 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | ||||| | || || |||||||| ||||| ||||| | || ||||| || Sbjct 200678 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200737 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 || ||||| | || |||||| Sbjct 200738 CATTCAAAAAGAATCCACACTTCAT 200762 Score = 113 bits (124), Expect = 7e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| | ||||| ||||| || || | ||||| |||| || Sbjct 200330 AATGCAAATCTTTGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200389 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| ||||| || || ||||| ||||||||||| ||||| || || Sbjct 200390 TGATACAATAGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200449 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | ||||| | || || |||||||| ||||| ||||| | || ||||| || Sbjct 200450 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200509 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 || ||||| | || |||||| Sbjct 200510 CATTCAAAAAGAATCCACACTTCAT 200534 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| | ||||| ||||| || || | ||||| |||| || Sbjct 200786 AATGCAGATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200845 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || |||||| || || || ||||| ||||||||||| ||||| || || Sbjct 200846 TGACACAATAGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200905 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | ||||| | || || |||||| | ||||| || || | ||||| || || Sbjct 200906 ACAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCAGACTACAA 200965 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 ||| ||||| | || ||||| || || ||| Sbjct 200966 TATTCAGAAAGAATCTACTCTTCACTTGGTTTTA 200999 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| | ||||| ||||| || || | ||||| |||| || Sbjct 200102 AATGCAGATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200161 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || |||||| || || || ||||| ||||||||||| ||||| || || Sbjct 200162 TGACACAATAGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200221 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | ||||| | || || |||||| | ||||| || || | ||||| || || Sbjct 200222 ACAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCAGACTACAA 200281 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| ||||| | || ||||| || || Sbjct 200282 TATTCAGAAAGAATCTACTCTTCACTTGGT 200311 >seq9873 Length=3435365 Score = 93.3 bits (102), Expect = 6e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 18410 TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469 |||||||| | ||| ||||| || || || | |||||||||||| |||||||| ||| Sbjct 2562348 TTTTCTTTTGGATCAGAAATATACGTTTCAATGAGCAAAGAATACATCTCAGAATGGATG 2562289 Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTA 18529 |||| || || || ||||| | |||||| | | || |||| | || | ||| | Sbjct 2562288 TTTTCTATTGCAATTTGAAAGCCATAAAAACAACGTGCTTCGGTAATTTTTACCTCTTGA 2562229 Query 18530 TAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAA 18589 ||||| || | || |||||||||||| ||||| || | | || || ||||| || Sbjct 2562228 CTGAATCTCTCAATCAGATTCTCATTAACAATACCATCGGATGCGGCAAAGAATGCTAAG 2562169 Query 18590 ACAT 18593 |||| Sbjct 2562168 ACAT 2562165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731731306756400